BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0040.p
         (119 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311385|ref|YP_003775477.1| flagellin protein [Herbaspirill...   172   7e-45

>gi|300311385|ref|YP_003775477.1| flagellin protein [Herbaspirillum
           seropedicae SmR1]
          Length = 119

 Score =  172 bits (436), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 103/119 (86%)

Query: 1   MSISPLNITAAGDSGSYTPVQPSNTKPDPVVSTVAPAASPQAQRSTESDVADAVDKLNDF 60
           MSI+PLNI +A DSG+   +  +  KPDPVVSTVAP A+P A+R+T+S+V DAV KLNDF
Sbjct: 1   MSIAPLNIASAADSGTAYALPKTAAKPDPVVSTVAPVAAPDARRATDSEVNDAVSKLNDF 60

Query: 61  ASKNASDLNFSRDKETGKTIVKVVDTATDVVIRQIPTEEAVAIAKSIDKMQGLLINHKA 119
           A+ NA+ LNFS+D++TGKTIVKV+DTATD VIRQIP+EEA+AIAKSIDKMQGLLINHKA
Sbjct: 61  AASNAAALNFSKDEDTGKTIVKVMDTATDTVIRQIPSEEAIAIAKSIDKMQGLLINHKA 119


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.122    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 340,192
Number of extensions: 12179
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,269,480
Effective search space: 57126600
Effective search space used: 57126600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 124 (52.4 bits)