BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0038.p (626 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 847 0.0 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 273 2e-74 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 234 2e-62 gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 164 2e-41 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/622 (64%), Positives = 494/622 (79%), Gaps = 1/622 (0%) Query: 1 LLDDHKVDEAKVLCAQVLKRAPNLVYANHAWGLIAMHENDFIGAEAALRKAVAADPTNSE 60 LLD K DEAK LC VL R P LV+ANHA GL+AMHE F AEA LRKA+ ADP N+E Sbjct: 34 LLDSRKTDEAKALCMAVLSRNPTLVFANHARGLVAMHEGKFADAEAYLRKAIEADPENAE 93 Query: 61 YIANLATSVLKQDRIDDSIALYEEAIKLNTENKDARIGLANALHEKNDPDASIAYFEDAV 120 Y++NLA +VL QDRID++IALYE AI+++ +++ +RIGLANALHEKNDP+AS+AYFEDAV Sbjct: 94 YMSNLAGTVLSQDRIDEAIALYEHAIRIDRDHRASRIGLANALHEKNDPEASVAYFEDAV 153 Query: 121 KRNPDAPGPLSHLGKALIDAKQYKEAVGVLFKSLQLQINFAPAHTNLGIAFQEMDMLKDA 180 KR P+APGPLSHLG+ALI+ K+Y EAV V+ KSL+LQI+FAP+HT LG AF M+M K+A Sbjct: 154 KREPNAPGPLSHLGRALIECKRYNEAVAVILKSLELQISFAPSHTALGEAFHAMEMYKEA 213 Query: 181 LECHKTSLLLDPTDIYAQNKIADTYIKQKEYDKANEHYERIIELAPKDPNSYTKLASSLF 240 +E HKT++LLDP D YA NKIAD+Y+K D+A+EH R+IE+APKDPN+Y KL SS F Sbjct: 214 IESHKTAILLDPQDTYAHNKIADSYLKLNRIDEAHEHLLRVIEIAPKDPNAYVKLGSSYF 273 Query: 241 SNQDRYEEAMALFHKALEVDPKHPLTHNNIGATMYDYGETVSSLQYFKDALALKPNYLTA 300 S DR+++AM +F+KALEVD KH LT+NNIGA +D+G+ ++ F+ AL L+PNY TA Sbjct: 274 STSDRFDDAMRMFNKALEVDSKHALTYNNIGAIQHDHGDLEDAIGNFRKALELRPNYPTA 333 Query: 301 QHNLALGQLLAGDLKDGWANHESRLEVKERRYVYKLIHKLFELIPKWDGKSSLQGKYILL 360 +HN+AL LL G LK+GW HESRL +ER +VY+LIHKLF+LIPKWDGKSSL GKYILL Sbjct: 334 RHNIALSLLLQGHLKEGWECHESRLVTRERSHVYRLIHKLFDLIPKWDGKSSLAGKYILL 393 Query: 361 MHEQGFGDSIQFVRYVHKLLEQGARVALHVKDPLARLFRSVSDQVTLVRENDPLPKCDYA 420 MHEQGFGDSIQF+RYV +L+QGARVALHVK+PL RLF+S S +VTLVRE+DPLP CD A Sbjct: 394 MHEQGFGDSIQFLRYVRMVLDQGARVALHVKNPLYRLFQSYSPEVTLVRESDPLPPCDCA 453 Query: 421 YVLMSLPHALGTDHVEDIPSYP-FYLSADPQDIKSWKDKMDMLAGNTGDLRVGFVWAGNP 479 YVLMSLP+A+GTD V+DIPS P YLSADP SW +K+ L+ + LRVG VW GNP Sbjct: 454 YVLMSLPYAMGTDTVDDIPSVPGGYLSADPILKSSWGEKIRQLSQSPEKLRVGVVWGGNP 513 Query: 480 EHGNDRKRSIPLETFAPLFNTPGVQFFSIQKGLATPELDKLPKGLPVYNIGDAFNDFADT 539 EHGNDR RSI ++ FA LF P ++F+S+QKG LP GLP++N+GD DFADT Sbjct: 514 EHGNDRHRSIAMDKFATLFQLPNIEFYSLQKGKPLDAFKALPPGLPIFNLGDDCQDFADT 573 Query: 540 AAAMANLDLIISVDTSVVHLAGALGRPTWTLLAHTPDWRWLNEREDSPWYPSMRLFRQQS 599 AAA+ANLDL++SVDTSVVHLAGALG PTW LL H PDWRWL +REDSPWYP MRLFRQ + Sbjct: 574 AAAIANLDLVVSVDTSVVHLAGALGHPTWVLLPHVPDWRWLQDREDSPWYPGMRLFRQPA 633 Query: 600 RNDWPTVINKVASELAILAQEK 621 +DW +V+ KV EL L Q+K Sbjct: 634 LSDWESVLTKVGQELVALQQKK 655 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 273 bits (699), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 202/618 (32%), Positives = 293/618 (47%), Gaps = 59/618 (9%) Query: 10 AKVLCAQVLKRAPNLVYANHAWGLIAMHENDFIGAEAALRKAVAADPTNSEYIANLATSV 69 A+ L +VL + P AN+ +G++ +H+ D+ AEA L KA+ +P + + + A ++ Sbjct: 27 AEELYKKVLVKLPRHFEANYLYGMLKLHQEDWETAEAQLAKAIELNPDHLDTYFDHAGAL 86 Query: 70 LKQDRIDDSIALYEEAIKLNTENKDARIGLANALHEKNDPDASIAYFEDAVKRNPDAPGP 129 R D+++A Y+ + +N + +A + AL ++A E A PD Sbjct: 87 AHLGRDDEAVARYDLVLTVNADFVEALLARGAALRRLGRNREALADLERATALAPDNADA 146 Query: 130 LSHLGKALIDAKQYKEAVGVLFKSLQLQINFAPAHTNLGIAFQEMDMLKDALECHKTSLL 189 G L D+ Y DA E ++ ++ Sbjct: 147 WFQRGNVLHDSYAYG----------------------------------DARESYERAVA 172 Query: 190 LDPTDIYAQNKIADTYIKQKEYDKANEHYERIIELAPKDPNSYTKLASSLFSNQDRYEEA 249 L P I A + +T + D+A Y+R +E+ P + + LF Q R EA Sbjct: 173 LRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQPDFFEAISNRGYVLFKMQ-RPAEA 231 Query: 250 MALFHKALEVDPKHPLTHNNIGATMYDYGETVSSLQYFKDALALKPNYLTAQHNLALGQL 309 + + +AL +D + P N G+T+ + + ++ A ALKP+ +A N AL QL Sbjct: 232 LQAYDRALALDERAPDLWFNRGSTLEQLYRFEEASESYRRAKALKPDAGSATWNEALMQL 291 Query: 310 LAGDLKDGWANHESRLEVKERRYVYKLIHKLFELIPKWDGKSSLQGKYILLMHEQGFGDS 369 GD +GW E+R ++ R + + P W G+ L+GK ILL EQGFGD+ Sbjct: 292 RQGDFVNGWKGFETRWATEQMRGQQRQFMQ-----PLWLGEQPLEGKTILLHAEQGFGDT 346 Query: 370 IQFVRYVHKLLEQGARVALHVKDPLARLFRSVSDQVTLVRENDPL--PKCDYAYVLMSLP 427 +QFVRY L +GARV L V+ L R + VT V D P D+ LMSLP Sbjct: 347 LQFVRYAPLLAARGARVILEVQPALTRQLAGLPG-VTQVIGTDHFMRPPFDFHCPLMSLP 405 Query: 428 HALGTDHVEDIPSYPFYLSADPQDIKSWKDKMDMLAGNTGDLRVGFVWAGNPEHGN---- 483 A T DIP P+ L + SW L N LRVG VWAG+ + Sbjct: 406 LACKTFSEADIPRAPYLLP----EASSWAAWHQRLPRNRA-LRVGLVWAGSSAQTHPDAV 460 Query: 484 --DRKRSIPLETFAPLFNTP----GVQFFSIQKGL-ATPELDKLPKGLPVYNIGDAFNDF 536 D +RS+P T APL ++F+S+Q G A +L P V + +DF Sbjct: 461 RIDGERSLPFATLAPLVELAREHAALEFYSLQVGQDAVAQLHAHPLASLVRDCSPELHDF 520 Query: 537 ADTAAAMANLDLIISVDTSVVHLAGALGRPTWTLLAHTPDWRWLNEREDSPWYPSMRLFR 596 A+T A +ANLDL+I+VDTSV HLAGALGRP W L H WRW EREDSPWY M +F Sbjct: 521 AETGALLANLDLLITVDTSVCHLAGALGRPVWLLNRHNGCWRWQVEREDSPWYGGMTIFG 580 Query: 597 QQSRNDWPTVINKVASEL 614 Q++ W VI +V + L Sbjct: 581 QRTAGQWDEVIARVRAAL 598 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 234 bits (596), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 195/589 (33%), Positives = 293/589 (49%), Gaps = 50/589 (8%) Query: 38 ENDFIGAEAALRKAVAADPTNSEYIANLATSVLKQDRIDDSIALYEEAIKL----NTENK 93 + D+ A+A L + A P + + + L + Q R ++ +++A++L + E Sbjct: 16 QEDYAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAWQQALRLLPPDSEEAL 75 Query: 94 DARIGLANALHEKNDPDASIAYFEDAVKRNPDAPGPLSHLGKALIDAK-QYKEAVGVLFK 152 R L A +E+ FEDA L + LI++ Q E Sbjct: 76 ALRYRLGRAFYEEG-------RFEDAFL-----------LYRELIESGWQLPELFVAAAA 117 Query: 153 SLQLQINFAPAHTNLGIAFQEMDMLKDALECHKTSLLLDPTDIYAQNKIADTYIKQKEYD 212 +LQ +P+ N Q + +L++AL+ DP ++ A + + +++D Sbjct: 118 ALQ---GMSPSGKN---DPQALALLEEALQ-------RDPGQADTWHRKAALHERARQWD 164 Query: 213 KANEHYERIIELAPKDPNSYTKLASSLFSN-QDRYEEAMALFHKALEVDPKHPLTHNNIG 271 A + + + L D + LA+ L + Q ++EEA+ + +AL + P+ H + G Sbjct: 165 AARQCIHQALRL--DDQRAQYWLAAGLVEHAQGQFEEALRYYDQALILAPELVDAHVSRG 222 Query: 272 ATMYDYGETVSSLQYFKDALALKPNYLTAQHNLALGQLLAGDLKDGWANHESRLEVKERR 331 T+ + ++ ++ AL + A NLAL L+ G L+ W +E R E + Sbjct: 223 TTLARLRQHEEAIDSYRRALRIDDKDADAHLNLALSLLVLGRLEQAWPLYEWRWEGRSAD 282 Query: 332 YVYKLIHKLFELIPKWDGKSSLQGKYILLMHEQGFGDSIQFVRYVHKLLEQGARVALHVK 391 Y+ IP W+G SSL GK ILL EQG GD+IQF RYV +L+ GA+V L V Sbjct: 283 -PYR-----HATIPAWNGGSSLAGKRILLWAEQGQGDTIQFSRYVALILQAGAQVVLEVP 336 Query: 392 DPLARLFRS--VSDQVTLVRENDPLPKCDYAYVLMSLPHALGTDHVEDIPSYPFYLSADP 449 L L S V +TLV +PLP+ D+ LMSLP T +DIP+ YL ADP Sbjct: 337 ASLLALMHSLAVPTPLTLVAMGEPLPEVDFQLPLMSLPLVCNT-RADDIPAAVPYLCADP 395 Query: 450 QDIKSWKDKMDMLAGNT-GDLRVGFVWAGNPEHGNDRKRSIPLETFAPL-FNTPGVQFFS 507 W++++ LA + +R+G V +GN + ND +RSI L FAPL P + FF Sbjct: 396 ARRILWEERLATLAPRSPARMRIGLVCSGNAGNVNDARRSIELSRFAPLALARPQLDFFV 455 Query: 508 IQKGLATPELDKLPKGLPVYNIGDAFNDFADTAAAMANLDLIISVDTSVVHLAGALGRPT 567 IQ L + + + +G A NDFADTAA +A +DL+ISVDT+ HLAGA+ P Sbjct: 456 IQPDLRQADRQWCEQQPGWHWVGAAINDFADTAAVLAGMDLVISVDTAAAHLAGAMACPV 515 Query: 568 WTLLAHTPDWRWLNEREDSPWYPSMRLFRQQSRNDWPTVINKVASELAI 616 W L + PDWRWL DSPWYP+ RLFRQQ W VI + + LA+ Sbjct: 516 WIALPYAPDWRWLLNAADSPWYPTARLFRQQQPGAWDDVILTLRAALAV 564 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 164 bits (415), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 120/382 (31%), Positives = 178/382 (46%), Gaps = 20/382 (5%) Query: 244 DRYEEAMALFHKALEVDPKHPLTHNNIGATMYDYGETVSSLQYFKDALALKPNYLTAQHN 303 +R+EEA+ + A + D L N+ + G + F+ AL P++ A+ Sbjct: 157 NRHEEALECYPPAADEDQARALHAFNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVG 216 Query: 304 LALGQLLAGDLKDGWANHESRLEVKE--RRYVYKLIHKLFELIPKWDGKSSLQGKYILLM 361 A L +GW HE+R + E RR + P+W ++GK +LL Sbjct: 217 RAHMLLSQQHYAEGWRAHEARFGIAELARRGIDSPR-------PRWRAGEPVRGKRVLLW 269 Query: 362 HEQGFGDSIQFVRYVHKLLEQGARVALHVKDPLARLFRSVSDQVTLVRENDPLPKCD-YA 420 EQG GD++QF RY+ + +Q A V+L L + QV + P D +A Sbjct: 270 AEQGQGDTLQFARYIPLVAQQAAEVSLCAPASLLAVLAPCLPQVRCMANPGEAPDHDLHA 329 Query: 421 YVLMSLPHALGTDHVEDIPSYPFYLSADPQDIKSWKDKMDML-AGNTGDLRVGFVWAGNP 479 +L D + PS YL+A PQ ++ W+ + L R+G WAG Sbjct: 330 SLLSLPLLLGLPDPRQGPPSP--YLAAQPQRVQQWQAYLSALWPAMPRRPRLGIAWAGRQ 387 Query: 480 EHGNDRKRSIPLETFAPLFNTPGVQFFSIQKGLATPELDKLPKGLPVYNI-GDAFNDFAD 538 R IPL+ APL+ P F S+Q + P D+ + D+AD Sbjct: 388 YATVHHSRDIPLDALAPLWTLPA-DFVSLQ--VEVPAGDQAAHATLAQRLHTPTLVDWAD 444 Query: 539 TAAAMANLDLIISVDTSVVHLAGALGRPTWTLLAHTPDWRWLNEREDSPWYPSMRLFRQQ 598 TAA + LDL+ISVDT+VVHLAGALG P L + +WRW + +PWYPS++L RQ+ Sbjct: 445 TAALLCALDLVISVDTAVVHLAGALGVPCLLPLRYDGEWRWGVKGSQTPWYPSLQLLRQR 504 Query: 599 SRNDWPTVINKVASELAILAQE 620 R W V+ ++ LA+ Q Sbjct: 505 ERGQWGPVVEEM---LAVCTQR 523 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,892,661 Number of extensions: 78186 Number of successful extensions: 320 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 288 Number of HSP's successfully gapped: 7 Length of query: 626 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 535 Effective length of database: 1,188,985 Effective search space: 636106975 Effective search space used: 636106975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)