BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0030.p
         (347 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311397|ref|YP_003775489.1| low-affinity phosphate transpor...   580   e-167

>gi|300311397|ref|YP_003775489.1| low-affinity phosphate transporter
           lipoprotein transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 335

 Score =  580 bits (1496), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 297/335 (88%), Positives = 320/335 (95%)

Query: 13  MHTVQISFHILALLIVLALLFDFMNGFHDAANAIATVVSTGVLRPQTAVAMAAFFNLAAV 72
           M T+QIS HILALLIVLALLFDFMNGFHDAANAIATVVSTGVLRPQTAVAMAAFFNLAAV
Sbjct: 1   MQTIQISLHILALLIVLALLFDFMNGFHDAANAIATVVSTGVLRPQTAVAMAAFFNLAAV 60

Query: 73  FVFHQLHVAASVGKGTIDPAVVDHVVVFGALIGAIFWNLVTWYYGIPSSSSHALIGGLVG 132
           FVFHQLHVAASVGKGTI+PA+VD  V+FGALIGAIFWNLVTWYYGIPSSSSHALIGGLVG
Sbjct: 61  FVFHQLHVAASVGKGTIEPAIVDQYVIFGALIGAIFWNLVTWYYGIPSSSSHALIGGLVG 120

Query: 133 AAVAKAGTGSLVASGLIKIVIFIVLSPLLGFILGSIMMLLVSWIFVRSTPRKVDGWFRRA 192
           +AVAKAGTG+L+++GL+K ++FIVLSPLLG + GS+MML+VSWIF RSTPRK+DGWFRR 
Sbjct: 121 SAVAKAGTGALISAGLLKTILFIVLSPLLGLVFGSLMMLVVSWIFFRSTPRKIDGWFRRL 180

Query: 193 QLVSASMYSLGHGGNDAQKTIGIIWMLLIASGNSGADNPPMWVIISCYCAISLGTLFGGW 252
           QL+SASMYSLGHGGNDAQKTIGIIWMLLIASG S  + PPMWVIISCYCAISLGTLFGGW
Sbjct: 181 QLLSASMYSLGHGGNDAQKTIGIIWMLLIASGYSSPEAPPMWVIISCYCAISLGTLFGGW 240

Query: 253 RIVKTMGQKITKLKPVGGFCAETGGAITLFIATAMGVPVSTTHTITGAIVGVGASHKMSA 312
           RIVKTMGQKITKLKPVGGFCAETGGAITLFIATA+G+PVSTTHTITGAIVGVGA+ KMSA
Sbjct: 241 RIVKTMGQKITKLKPVGGFCAETGGAITLFIATALGIPVSTTHTITGAIVGVGAAQKMSA 300

Query: 313 VRWGVAGNIVWAWIFTIPASAFVAAIAWWIGMHIL 347
           VRWGVA NIVWAWIFTIPASAFVAAIAWWIG+H+L
Sbjct: 301 VRWGVASNIVWAWIFTIPASAFVAAIAWWIGVHVL 335


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,029,752
Number of extensions: 39766
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,212,660
Effective search space: 316504260
Effective search space used: 316504260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)