BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0029.p
         (551 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311398|ref|YP_003775490.1| phosphate starvation-inducible ...   998   0.0  
gi|300310057|ref|YP_003774149.1| phosphate starvation-inducible ...   107   3e-24

>gi|300311398|ref|YP_003775490.1| phosphate starvation-inducible
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 566

 Score =  998 bits (2579), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/554 (88%), Positives = 517/554 (93%), Gaps = 4/554 (0%)

Query: 1   LAPKDYPKAERGKTVKPHIALVEPAAPIAPVASIAAPVAKAQQPLQP-QAKITGKSPV-- 57
           L+P+DYPKA+R K VKP+I LVE     A  + +AA     +      +A+ITGK+    
Sbjct: 14  LSPEDYPKADRSKPVKPNITLVETTPAPAVASPVAAVAPAVEAKAAAPRARITGKTTTVA 73

Query: 58  EKPRTGTPKVLESRAKSTTSRIADKLGVSKLFVLDTNVLMHDPTSLFRFEEHDIYLPMIT 117
           EKP+T  PK  E R KS TSR+ADKLG SKLFVLDTNVLMHDPTSLFRFEEHDIYLPM+T
Sbjct: 74  EKPKTA-PKSAEIRPKSPTSRVADKLGKSKLFVLDTNVLMHDPTSLFRFEEHDIYLPMVT 132

Query: 118 LEELDNHKKGMSEVARNARQISRSLDALVSDIAEDAIDLGIPLSKLGNKDAKGRLFFQTK 177
           LEELDNHKKGMSEVARNARQISRSLDALVSD+AED+IDLGIPL+KLGNKDAKGRL+FQTK
Sbjct: 133 LEELDNHKKGMSEVARNARQISRSLDALVSDVAEDSIDLGIPLAKLGNKDAKGRLYFQTK 192

Query: 178 LQNAKLPDGLPEGKADNQILGVVRALDQQYPERPVVLVSKDINMRIKARAIGLPAEDYFN 237
           LQNA LP+GLPEGKADNQILGVVRALDQQYPERPVVLVSKDINMR+KARAIGLPAEDYFN
Sbjct: 193 LQNAALPEGLPEGKADNQILGVVRALDQQYPERPVVLVSKDINMRLKARAIGLPAEDYFN 252

Query: 238 DHVLEDTDLLYSGIQQLPDDFWNKHGKGMESWQENKHGTSYTYYRVTGPHVPSMLMNQFV 297
           DHVLEDTDLLYSGIQQLPDDFWNKHGKGMESWQE++HG+SYTYYRVTGP+VPS+L+NQFV
Sbjct: 253 DHVLEDTDLLYSGIQQLPDDFWNKHGKGMESWQESRHGSSYTYYRVTGPYVPSLLVNQFV 312

Query: 298 FIEPKNGEPAFYGQVTQINGKTAVLQTLRDYGHTKNSVWGITARNREQNFALNLLMNPEC 357
           FIEPKNGEPAFYGQVTQINGKTAVLQTLRD+GH KNSVWGITARNREQNFALNLLMNPEC
Sbjct: 313 FIEPKNGEPAFYGQVTQINGKTAVLQTLRDFGHAKNSVWGITARNREQNFALNLLMNPEC 372

Query: 358 DFVTLLGQAGTGKTLLALAAGLAQVLETKNYNEIIVTRVTVPVGEDIGFLPGTEEEKMGP 417
           DFVTLLGQAGTGKTLLALA+GLAQVLETK YNEIIVTRVTVPVGEDIGFLPGTEEEKMGP
Sbjct: 373 DFVTLLGQAGTGKTLLALASGLAQVLETKLYNEIIVTRVTVPVGEDIGFLPGTEEEKMGP 432

Query: 418 WMGAFDDNLEVLNKSDGDAGEWGRAATQDLIRSRIKIKSLNFMRGRTFVNKFLIIDEAQN 477
           WMGAFDDNLEVLNKSDGDAGEWGRAATQDLIRSRIKIKSLNFMRGRTFVNKFLIIDEAQN
Sbjct: 433 WMGAFDDNLEVLNKSDGDAGEWGRAATQDLIRSRIKIKSLNFMRGRTFVNKFLIIDEAQN 492

Query: 478 LTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDRFKGWSHSGHVTLAR 537
           LTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDRFKGW+HSGHVTLAR
Sbjct: 493 LTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDRFKGWAHSGHVTLAR 552

Query: 538 GERSRLADHASDVL 551
           GERSRLADHASDVL
Sbjct: 553 GERSRLADHASDVL 566


>gi|300310057|ref|YP_003774149.1| phosphate starvation-inducible
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 373

 Score =  107 bits (266), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 94/176 (53%), Gaps = 13/176 (7%)

Query: 332 KNSVWGITARNREQNFALNLLMNPECDFVTLLGQAGTGKTLLALAAGLAQVLETKNYNEI 391
           K     +  R   Q+  LN ++  E D    +G AGTGKT LA+A  +   LE      I
Sbjct: 132 KTRKHDLRGRTPHQSQYLNAIL--EHDITFGVGPAGTGKTYLAVACAV-DALERDAVQRI 188

Query: 392 IVTRVTVPVGEDIGFLPGTEEEKMGPWMGAFDDNLEVLNKSDGDAGEWGRAATQDLIRSR 451
           ++TR  V  GE +GFLPG   +K+ P++    D L  L          G   TQ L   +
Sbjct: 189 VLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDL---------LGFDRTQKLFEKQ 239

Query: 452 -IKIKSLNFMRGRTFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQID 506
            I+I  L +MRGRT  + F+I+DEAQN TP+QMK  +TR G G+K V  G++ Q+D
Sbjct: 240 AIEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVITGDVTQVD 295


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,537,019
Number of extensions: 60405
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 2
Length of query: 551
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 461
Effective length of database: 1,193,720
Effective search space: 550304920
Effective search space used: 550304920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)