BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0027.p
         (328 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311400|ref|YP_003775492.1| xylanase/chitin deacetylase [He...   534   e-153

>gi|300311400|ref|YP_003775492.1| xylanase/chitin deacetylase
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score =  534 bits (1375), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 252/312 (80%), Positives = 278/312 (89%)

Query: 16  LPQITLKIDADTYRGTREGVPNLVQQLLRHDANATFLFSLGPDHTGWALKQVFRPGFFSK 75
           +P++TLKIDADTYRGTR GVPNL+ QL RH A ATFLFSLGPDHTGWALKQ+FRPGFFSK
Sbjct: 1   MPKLTLKIDADTYRGTRVGVPNLISQLRRHGAGATFLFSLGPDHTGWALKQIFRPGFFSK 60

Query: 76  VSRTSVVEHYGIKTLMYGTLLPAPDIGKTCAKYMGAVRDAGFECGIHTWDHRVWQDHVRT 135
           VSRTSVVEHYGIKTLMYGTLLPAPDIGKTCA +M     AGFECGIHTWDHRVWQD+VRT
Sbjct: 61  VSRTSVVEHYGIKTLMYGTLLPAPDIGKTCADFMRQAHAAGFECGIHTWDHRVWQDNVRT 120

Query: 136 RDAAWTRETMQRSYARFHDIFGHAPVTHGAAGWQMNDHAFAQLDEFGIAYSSDGRAVLNE 195
            DA WT ETMQ++Y R+HDIFGHAP THGAAGWQMNDHAF QLD+FGIAYSSDGR+ L E
Sbjct: 121 ADAQWTTETMQQAYGRYHDIFGHAPRTHGAAGWQMNDHAFVQLDQFGIAYSSDGRSQLRE 180

Query: 196 DGSLQDFAAGPHRLAAGGKTLSCVQLPTTLPTLDELLGRTIHGVVMDASNVAAMLLRLTE 255
           DGSL D  AGPHRL+  GK LSCVQLPTTLPTLDE+LGRTI G ++DA N A +LL LT+
Sbjct: 181 DGSLADQDAGPHRLSVFGKPLSCVQLPTTLPTLDEILGRTIRGKLIDAGNAAELLLELTK 240

Query: 256 QRRDHVFTLHAELEGQKLAPIFEQLLLGWRAQGYDLVSMGEYYQTVKDDVLPILPIAWGE 315
             RDHVFTLHAELEGQKLAPIFE+LL GWRAQGY+LVSMG+YYQ++++DVLPILPI+WGE
Sbjct: 241 TPRDHVFTLHAELEGQKLAPIFERLLAGWRAQGYELVSMGDYYQSIQNDVLPILPISWGE 300

Query: 316 LPGRSGDMILQA 327
           LPGRSGDMILQA
Sbjct: 301 LPGRSGDMILQA 312


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,092,462
Number of extensions: 45371
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,212,660
Effective search space: 293463720
Effective search space used: 293463720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)