BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0024.p
         (318 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311403|ref|YP_003775495.1| polymixin resistance glycosyltr...   583   e-168

>gi|300311403|ref|YP_003775495.1| polymixin resistance
           glycosyltransferase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score =  583 bits (1502), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 275/318 (86%), Positives = 304/318 (95%)

Query: 1   MKPEISVVIPVYNEETGLAKLFDRLYPALDALGMPYEIIYVNDGSRDKSAAILADQYRLR 60
           MKPE+SVVIPVYNEE+GL+KLF+RLYPALDALG  YE+I+VNDGSRD+SA ILA+QYRLR
Sbjct: 1   MKPELSVVIPVYNEESGLSKLFERLYPALDALGYSYEVIFVNDGSRDRSAGILAEQYRLR 60

Query: 61  PDVTRVVLFNGNYGQHMAILAGFDATRGDIVITLDADLQNPPEEIGNLVAKMREGYDYVG 120
           PDVTRVVLFNGNYGQHMAI+AGF+ATRGDIV+TLDADLQNPPEEIGNLVAKMREGYDYVG
Sbjct: 61  PDVTRVVLFNGNYGQHMAIMAGFEATRGDIVVTLDADLQNPPEEIGNLVAKMREGYDYVG 120

Query: 121 SIRRQRQDSAWRTWASKAMNHLREKITHIKMTDQGNMLRAYGRNVIDLVNQCREVNTFVP 180
           SIRR+RQDSAWRT+ASKAMN LREKIT IKMTDQGNMLRAYGRNVIDLVN+CRE+NTFVP
Sbjct: 121 SIRRKRQDSAWRTYASKAMNRLREKITRIKMTDQGNMLRAYGRNVIDLVNKCREINTFVP 180

Query: 181 ALAYTFARKPTEITVEHEERAAGESKYSLYSLIRLNFDLITGFSLVPLQFFSLLGIGLSF 240
           ALAYTF+R PTEI VEHEER+AGESKYSLYSLIRLNFDL+TGFSLVPLQFFSLLGIGLSF
Sbjct: 181 ALAYTFSRNPTEIVVEHEERSAGESKYSLYSLIRLNFDLVTGFSLVPLQFFSLLGIGLSF 240

Query: 241 ASAALFVLMVIRRFILGAEVQGVFTLFAITFFLIGVILFGIGLLGEYIGRIYLQVRARPR 300
           ASAALF+L+V+RR ++GAEV GVFTLFAITFFL+GVILF IGLLGEYIGRIY+QVRARPR
Sbjct: 241 ASAALFILIVLRRLLIGAEVGGVFTLFAITFFLMGVILFSIGLLGEYIGRIYMQVRARPR 300

Query: 301 YVIQAVLEHSYDQDKQSS 318
           YV+QA+LE S  +D QS+
Sbjct: 301 YVVQAILEQSSAEDNQST 318


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.141    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 911,865
Number of extensions: 36397
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,217,395
Effective search space: 283653035
Effective search space used: 283653035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)