BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0020.p
         (572 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311406|ref|YP_003775498.1| undecaprenyl-phosphate-4-amino-...   916   0.0  

>gi|300311406|ref|YP_003775498.1|
           undecaprenyl-phosphate-4-amino-L-arabinose--lipid A
           4-amino-L-arabinosyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 572

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/571 (78%), Positives = 508/571 (88%)

Query: 1   MRDLYKSKAFVWTLLIFFLLIWFYMLGARTLVPTDEGRYAEMAREMVATQDWITTRLNGI 60
           MR+LYKSKAFVWTLLI FLL+WF+MLGAR LVPTDEGRYAEMAREMVATQDWITTRLNGI
Sbjct: 1   MRELYKSKAFVWTLLILFLLVWFWMLGARVLVPTDEGRYAEMAREMVATQDWITTRLNGI 60

Query: 61  KYFEKPPLQTWMNAVTFELFGLGEWQARLWTGLCGLFGIGLVAYTGRRVFNARVAFYAPL 120
           KYFEKPPLQTWMNA+TFELFGLGEWQARLWTGLCGL GIGL AYTG+RVF+ARV +YA L
Sbjct: 61  KYFEKPPLQTWMNAITFELFGLGEWQARLWTGLCGLLGIGLAAYTGKRVFSARVGYYAAL 120

Query: 121 VLASSFFWAGMGHINSLDMGLAGMMTLSICALLLAQRNDASRDEQRNWMLLCWAGMALAV 180
           VLASSFFWAGMGHIN+LDMGL+GMMT+++CALL+AQR+ ASR+ QRNWMLLCWAGMALAV
Sbjct: 121 VLASSFFWAGMGHINTLDMGLSGMMTIALCALLMAQRDGASREGQRNWMLLCWAGMALAV 180

Query: 181 LSKGLIGIVLPGAVLVLYTIFSRDWAIWKRLHLIKGLILFFVITTPWFVLVSLKNPEFPQ 240
           LSKGLIGIVLPGAVLVLYT+F+RDWAIWKRLHL+KGL+LFF I TPWFV VSL+NPEFPQ
Sbjct: 181 LSKGLIGIVLPGAVLVLYTLFARDWAIWKRLHLVKGLLLFFAICTPWFVAVSLRNPEFPQ 240

Query: 241 FFFIHEHFQRFTTKIHSRTGPWYYFLPILLLGILPWLGVLVQSLLHGLREDQGNSSFNSL 300
           FFFIHEHFQRFTTKIHSRTGPWYYF+PILLLGI+PWLGV  QSL  G RE +  + +NSL
Sbjct: 241 FFFIHEHFQRFTTKIHSRTGPWYYFIPILLLGIIPWLGVFFQSLWKGTREQRDTAGYNSL 300

Query: 301 TNGKFQPRKMLLIWSVFIFVFFSISSSKLPSYILPIFPTLALLIASYLERSSSKAIIWSA 360
             G+FQP+++LL+W+VFIFVFFSIS SKLPSY+LPIFP LALLIA YLE +  KA+ W+ 
Sbjct: 301 NGGRFQPKRLLLVWAVFIFVFFSISDSKLPSYVLPIFPALALLIACYLEEADHKALAWAG 360

Query: 361 MVVAVPCAIGMAFISRVPSLAKDAYSLPLVSAHVPWIYAATIIAFVGAVLAIRFARSQKD 420
            +VA+P A+ +AFI RVP LAKDAYSLPLV AH+P++YA  +I F+G + AIR AR  KD
Sbjct: 361 SLVALPSAVALAFIPRVPELAKDAYSLPLVQAHMPYLYAGALIFFIGGIAAIRLARQNKD 420

Query: 421 LAVVFLAAATFVSGQLLMLGHDPQGRYSAGIDYVPALQAELTPETPMYLVGRYEQALPFY 480
            AV  LAA  F++GQLL+LGH+PQGRYSAG+DYVPALQAEL PETP+YLVGRYEQ+LPFY
Sbjct: 421 GAVTALAATAFLAGQLLILGHEPQGRYSAGVDYVPALQAELKPETPIYLVGRYEQSLPFY 480

Query: 481 LQRTMTLVRHADEMEFGLKQEPQLWLPTIDAFVAQWVADHTAGKKDIAIIDPSVYADLKQ 540
           L+RTMTLV+HADEM FGLKQEPQLWLPT+DAFVAQWVADH AGKKDIAII+P++Y  L +
Sbjct: 481 LRRTMTLVQHADEMAFGLKQEPQLWLPTVDAFVAQWVADHAAGKKDIAIINPTIYQQLLE 540

Query: 541 RGVPMRLIGQDPRRVIVANNPDVIEKNPKAA 571
           R +PMRLIGQDPRRVIVAN+P       KAA
Sbjct: 541 RKLPMRLIGQDPRRVIVANDPAPDAAEKKAA 571


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,711,202
Number of extensions: 69991
Number of successful extensions: 294
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 482
Effective length of database: 1,193,720
Effective search space: 575373040
Effective search space used: 575373040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 133 (55.8 bits)