BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0008.p (336 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312334|ref|YP_003776426.1| transcription regulator protein... 328 3e-91 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 160 1e-40 gi|300312196|ref|YP_003776288.1| LysR family transcription regul... 146 3e-36 gi|300310802|ref|YP_003774894.1| LysR family transcription regul... 132 3e-32 gi|300313769|ref|YP_003777861.1| transcription regulator protein... 129 2e-31 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 328 bits (842), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 169/217 (77%), Positives = 185/217 (85%), Gaps = 10/217 (4%) Query: 1 MDQFKQISTFVDVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60 MDQFKQISTF +VAA+GSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN Sbjct: 1 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60 Query: 61 EGAAFLEDCQRILTDLEDAESSVSERSARASGNLLISAPAGFGRQHVAPLVPSFLTEHRD 120 EGAAFLEDCQRIL DLEDAES+VSERSARASG LLISAPAGFGRQHVAPL+PSFL EHRD Sbjct: 61 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRD 120 Query: 121 VTLTLNLNDRIVDLIGEGVDVAIRIAALTDSNLISVKLADNHRVVVAAPSYLRRHGIPXR 180 VTLTLNLNDRI D+IGEG+DVAIRIA LTDSNL+SVKLA+NHRV+VAAP+YLRRH Sbjct: 121 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRH----- 175 Query: 181 RPGAPQLPGHQQRRQPARLDAQAARQGQRLQGRRQYG 217 G PQ P R + ++ +++G L RQ G Sbjct: 176 --GTPQSPDELMRHNCLAMSSEGSQRGWTL---RQSG 207 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 160 bits (406), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 84/178 (47%), Positives = 118/178 (66%) Query: 1 MDQFKQISTFVDVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60 M++ ++I F+ VA GS AA A GI+ A + R + LE RLG +L+QRTTR++ LT Sbjct: 1 MNKLREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 Query: 61 EGAAFLEDCQRILTDLEDAESSVSERSARASGNLLISAPAGFGRQHVAPLVPSFLTEHRD 120 GA +LE C++I+ LE+A+ +S SA+ +G L I+AP FG H+APL P FL H + Sbjct: 61 AGALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPE 120 Query: 121 VTLTLNLNDRIVDLIGEGVDVAIRIAALTDSNLISVKLADNHRVVVAAPSYLRRHGIP 178 ++L + L+DRIVD+I EG D+AIRIA L+DS L+ KL V A+P+YL HG P Sbjct: 121 ISLDITLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTP 178 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 146 bits (368), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 108/178 (60%) Query: 1 MDQFKQISTFVDVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60 MD+ + + TFV V GS AA G + + R++ LE+ LG++LL RTTR++ LT+ Sbjct: 1 MDKLQAMQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 60 Query: 61 EGAAFLEDCQRILTDLEDAESSVSERSARASGNLLISAPAGFGRQHVAPLVPSFLTEHRD 120 EG + C+ +L ++D ES V S +A G L I AP FG + +APL F +H Sbjct: 61 EGRVYFARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPL 120 Query: 121 VTLTLNLNDRIVDLIGEGVDVAIRIAALTDSNLISVKLADNHRVVVAAPSYLRRHGIP 178 +TL + L+DR +DL+ EG D+AIRI+AL DS +++ LA + AAP +L RHG P Sbjct: 121 ITLNITLSDRTIDLLEEGFDMAIRISALGDSRMVARPLAPVRMIACAAPEFLARHGTP 178 >gi|300310802|ref|YP_003774894.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 132 bits (333), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 69/175 (39%), Positives = 106/175 (60%) Query: 4 FKQISTFVDVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTNEGA 63 + + F VA S + +AR G +PA I +R+ LE+ LGV+L RTTR +V+T EG Sbjct: 7 LEDLRLFCVVARHSSFAGSAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEEGG 66 Query: 64 AFLEDCQRILTDLEDAESSVSERSARASGNLLISAPAGFGRQHVAPLVPSFLTEHRDVTL 123 E +RIL D+E +VS G L IS G GR+ V+PL+ F +EH ++ + Sbjct: 67 NVHEWARRILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELKI 126 Query: 124 TLNLNDRIVDLIGEGVDVAIRIAALTDSNLISVKLADNHRVVVAAPSYLRRHGIP 178 L L DR +DL+ EG+D+ IR+ A + +L S ++ + RV+ A+P+YL++HG+P Sbjct: 127 QLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGLP 181 >gi|300313769|ref|YP_003777861.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 129 bits (325), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 110/178 (61%), Gaps = 3/178 (1%) Query: 1 MDQFKQISTFVDVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60 M+ ++ F V GS SAAARA + + RR+ LE+RLGV+LLQR+TR + +T Sbjct: 1 MEDLNDLALFAAVVVHGSFSAAARALNTPKSRVSRRVAELEQRLGVRLLQRSTRVVRVTE 60 Query: 61 EGAAFLEDCQRILTDLEDAESSVSERS-ARASGNLLISAPAGFGRQHVAPLVPSFLTEHR 119 G+AF C+ +T+ A V+E + AR +G L +S+P G +APL+ FL H Sbjct: 61 VGSAFFTHCE-AMTNAARAAVEVTEHAGARPAGRLRVSSPMGVAHVFLAPLLARFLCAHP 119 Query: 120 DVTLTLNLNDRIVDLIGEGVDVAIRI-AALTDSNLISVKLADNHRVVVAAPSYLRRHG 176 DV L L L++R VD+IGEG DVA+R+ + L DS+L+ + +V+ A+P+Y+R HG Sbjct: 120 DVRLELELSNRRVDVIGEGFDVAMRVRSTLEDSSLVVRTFGTSQQVLAASPAYVRAHG 177 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 777,194 Number of extensions: 25710 Number of successful extensions: 204 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 191 Number of HSP's successfully gapped: 45 Length of query: 336 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 250 Effective length of database: 1,212,660 Effective search space: 303165000 Effective search space used: 303165000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)