BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0007.p
         (532 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312333|ref|YP_003776425.1| malate synthase [Herbaspirillum...  1047   0.0  

>gi|300312333|ref|YP_003776425.1| malate synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 528

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/532 (94%), Positives = 518/532 (97%), Gaps = 4/532 (0%)

Query: 1   MTQLTLPAGMQISGEIKPGYEQILTPDALALVAKLSRAFESRRQELLAVRVERVKRLDAG 60
           MTQL LP GM+ISG+IKPGYE ILT +AL+LVAKLSRAFE RRQELLA R ERVKRLDAG
Sbjct: 1   MTQLKLPTGMEISGDIKPGYENILTFEALSLVAKLSRAFEGRRQELLAARAERVKRLDAG 60

Query: 61  ERPDFLPETANIRSGDWKIAPIPEALKCRRVEITGPVERKMVINAFNSGADSYMTDFEDS 120
           ERPDFL ET +IR+GDWKIAPIPEALKCRRVEITGPVERKMVINAFNSGADSYMTDFEDS
Sbjct: 61  ERPDFLKETESIRTGDWKIAPIPEALKCRRVEITGPVERKMVINAFNSGADSYMTDFEDS 120

Query: 121 NSPVWDNQISGQINLFDAIRRTISLESNGKSYKLNDKIATLVVRPRGWHLDEKHVTIDGK 180
           NSPVWDNQISGQINL+DAIRRTISLESNGKSYKLNDKIATLVVRPRGWHLDEKHVT+DGK
Sbjct: 121 NSPVWDNQISGQINLYDAIRRTISLESNGKSYKLNDKIATLVVRPRGWHLDEKHVTLDGK 180

Query: 181 RISGGIFDFALFLFHNAKEQLARGAGPYFYLPKMESHLEARLWNDIFVMAQNEIGLPQGT 240
           RISGGIFDFALFLFHNAKEQLARGAGPYFYLPKMESHLEARLWNDIFVMAQNEIGLPQGT
Sbjct: 181 RISGGIFDFALFLFHNAKEQLARGAGPYFYLPKMESHLEARLWNDIFVMAQNEIGLPQGT 240

Query: 241 IKATVLIETITAAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFKNDKDFCLADRAKVT 300
           IKATVLIETITAAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFKNDKDFCLADRAKVT
Sbjct: 241 IKATVLIETITAAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFKNDKDFCLADRAKVT 300

Query: 301 MTAPFMRSYALLLLKTCHKRGAPAIINYIGGMSALIPIKNDPEKNAIAMQGIINDKRRDA 360
           MT+PFMR+YALLLLKTCHKRGAPA    IGGMSALIPIKNDPEKNAIAMQGIINDKRRDA
Sbjct: 301 MTSPFMRAYALLLLKTCHKRGAPA----IGGMSALIPIKNDPEKNAIAMQGIINDKRRDA 356

Query: 361 TDGYDGGWVAHPGLVEPSMKEFVAVLGDKPNQFEKQRPDVDVKAADLLNFQPETPITEAG 420
           TDGYDGGWVAHPGLVE SMKEFVAVLGDKPNQFEKQRPDVDVKAADLLNFQPETPITEAG
Sbjct: 357 TDGYDGGWVAHPGLVEASMKEFVAVLGDKPNQFEKQRPDVDVKAADLLNFQPETPITEAG 416

Query: 421 LRYNINVGIHYLGAWLAGNGCVPIHNLMEDAATAEISRAQVWQWIRSSKGNLEDGRKVTA 480
           LRYNINVGIHYLGAWLAGNGCVPIHNLMEDAATAEISRAQVWQWIRS+KGNLEDGRKVTA
Sbjct: 417 LRYNINVGIHYLGAWLAGNGCVPIHNLMEDAATAEISRAQVWQWIRSAKGNLEDGRKVTA 476

Query: 481 DMVRAMIPEELAKVKEVAGNGPTYDRAAKIFEDMSTSETFAEFLTLPLYEEI 532
           DMVRAMIPEELAKVK+VAG+GPTYDRAAKIFE+MSTSETFAEFLTLPLYEEI
Sbjct: 477 DMVRAMIPEELAKVKQVAGDGPTYDRAAKIFEEMSTSETFAEFLTLPLYEEI 528


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,683,047
Number of extensions: 71216
Number of successful extensions: 196
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 442
Effective length of database: 1,193,720
Effective search space: 527624240
Effective search space used: 527624240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)