BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0002.p (1151 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312329|ref|YP_003776421.1| transcription-repair ATP-depend... 2061 0.0 gi|300310559|ref|YP_003774651.1| TP-dependent DNA helicase RecG ... 219 8e-58 >gi|300312329|ref|YP_003776421.1| transcription-repair ATP-dependent coupling factor [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 2061 bits (5341), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1006/1151 (87%), Positives = 1077/1151 (93%), Gaps = 6/1151 (0%) Query: 1 MSFDLKKSLPKPGARFVPPAPHGSADAYLLAQAAIALKAEKRMLTVVVANATDAQRLLSE 60 MSFD KKSLPK G RF PPA HGSADAYLLAQAA+ALKAE RML VVVA ATDAQRLL+E Sbjct: 1 MSFDPKKSLPKAGIRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAE 60 Query: 61 IPWFQRPVEGSDGGDKLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQNGQCDVLIV 120 IPWFQ P EG ++LRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQ+GQCD+LIV Sbjct: 61 IPWFQ-PSEG----ERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIV 115 Query: 121 PATTALLRMAPPGFLAAYTFFFKQGEKLDEARLKSQLTLAGYTHVTQVMSPGEYSVRGGL 180 PATTALLRMAPP FLAAYTFFFKQGEKLDE +LKSQLTLAGYTHV QVMSPGEYSVRGGL Sbjct: 116 PATTALLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGL 175 Query: 181 IDIFPMGSALPYRLDLFGDIIETIRTFDADTQRSLYPVREVRLLPGREFPMDEISRSAFR 240 IDIFPMGS LPYRLDLFGD IETIRTFDADTQRSLYPV EVRLLPGREFPMDE SR AFR Sbjct: 176 IDIFPMGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEASRLAFR 235 Query: 241 SRWREVFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFRYLPENSMFATVGDID 300 +RWREVFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLF+YLP N+MFATVGDI+ Sbjct: 236 NRWREVFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIE 295 Query: 301 QAIKRFWSDTRSRHNFLKADRERPVLAPEQVFLTDEDFFTLVKPYGRWVLQTDDTPSALS 360 QAIKRFWSDTRSR NFL ADRERPVL P+ ++L DEDFFTL+KP+ RWVL+TDD PSA+S Sbjct: 296 QAIKRFWSDTRSRWNFLHADRERPVLEPQAIYLDDEDFFTLLKPHARWVLKTDDAPSAIS 355 Query: 361 APIPNVAVNRRTDDPLTNLRAYLLKTGKRVMLCAESNGRRETLQQYFAEYDLHPALCDGY 420 AP+PN+AVNRR DDPL NLR++LLK +RV++CAESNGRRETLQQYFAEYDLHP LC+ + Sbjct: 356 APLPNIAVNRRADDPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPVLCEDW 415 Query: 421 DSFIGNSEPLMLGVAPLHAGFELEQEQVAFITETELYAGSGRRVGRKKQENVTQVEHMVR 480 + F+ + EPLMLGVAPLHAGF + +A +TETELYAGSGRRVG +KQ+ T VE+MVR Sbjct: 416 NGFLASDEPLMLGVAPLHAGF-VTAAGLALVTETELYAGSGRRVGSRKQQAATDVEYMVR 474 Query: 481 DLSELKIGDPVVHANHGIGRYMGLLSMDLGEGETEFLHLEYAKETKLYVPVSQLHVIARY 540 DLSELKIGDPVVH++HGIGRYMGL+SMDLGEGETEFLHLEYAKETKLYVPVSQLHVI+RY Sbjct: 475 DLSELKIGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRY 534 Query: 541 SGASPEDAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRALRQGHAFQYSARDYET 600 SGASPEDAPLH+LGSGQWEKAKRKAAQQ+RDTAAELLNLYARRALRQGHAFQYSA DYE Sbjct: 535 SGASPEDAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEA 594 Query: 601 FAESFGFEETPDQAAAINAVIGDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQV 660 FA+SFGFEET DQAAAINAVI DMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQV Sbjct: 595 FADSFGFEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQV 654 Query: 661 AILAPTTLLAEQHAQTFADRFANWPVRIAELSRFRTGKEITQAIKGMADGTLDIIIGTHK 720 AILAPTTLLAEQHA TFADRFANWPV+IAELSRFRTGKE+TQAIKG+ DGT+DI+IGTHK Sbjct: 655 AILAPTTLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHK 714 Query: 721 LLSDDVKFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRD 780 LLSD+VKFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRD Sbjct: 715 LLSDEVKFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRD 774 Query: 781 FSIIATAPQKRLAIKTFVRAEGESTIREACLRELKRGGQVYFLHNEVDTIENRKAMLEAL 840 FS+IATAPQKRLAIKTFVRAE ESTIREACLRELKRGGQVYFLHNEV+TI NRKA LE L Sbjct: 775 FSVIATAPQKRLAIKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAALEQL 834 Query: 841 LPEARVVIAHGQMHERDLEKVMRDFVAQRSNILLCTTIIETGIDVPTANTIIMHRADKFG 900 LPEAR+ +AHGQMHERDLEKVMRDFVAQR NILLCTTIIETGIDVPTANTIIMHRADKFG Sbjct: 835 LPEARIGVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFG 894 Query: 901 LAQLHQLRGRVGRSHHQAYAYLLVNDVKGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEI 960 LAQLHQLRGRVGRSHHQAYAYLLV DV+GL+KQAQRRLEAIQQMEELGSGFYLAMHDLEI Sbjct: 895 LAQLHQLRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEI 954 Query: 961 RGAGEVLGDSQSGEMHEIGFQMYSDMLSEAVRALKDGREPDLAAPLASTTEINLHVPALL 1020 RGAGEVLGD QSGE+HEIGFQMYSDML+EAVRALKDGREPDLAAPL++TTEINLH PALL Sbjct: 955 RGAGEVLGDHQSGEIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALL 1014 Query: 1021 PNDYCGDVHERLSLYKRFANCTSQDTIDALQEELIDRFGKLPEVAKALVETHRLRIAAKP 1080 PND+CGDVHERLSLYKR ANC D IDALQEELIDRFGKLP+ AKAL+ETHRLRIAAKP Sbjct: 1015 PNDFCGDVHERLSLYKRLANCEKSDAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKP 1074 Query: 1081 LGIIKIDAHAESALLQFVPNPPVDAMRIIELIQKNRHIKLNGQDKLRITANMPDLNARVT 1140 LGIIKIDAH+E+ALLQFVPNPP+DAMRIIEL+QKNR +KLNG DKLRITA+MPDLNARV Sbjct: 1075 LGIIKIDAHSEAALLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITASMPDLNARVQ 1134 Query: 1141 QIKATMRSLVG 1151 Q+KATM++L G Sbjct: 1135 QVKATMKALTG 1145 >gi|300310559|ref|YP_003774651.1| TP-dependent DNA helicase RecG protein [Herbaspirillum seropedicae SmR1] Length = 722 Score = 219 bits (559), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 153/403 (37%), Positives = 214/403 (53%), Gaps = 31/403 (7%) Query: 594 SARDYETFAESFGFEETPDQAAAINAVIGDMTGGKPMDRLICGDVGFGKTEVALRAAFVA 653 + R E F+ T Q + + D+ PM RL+ GDVG GKT VA AA A Sbjct: 279 TGRITEELTRLLPFQLTGAQQRVLEEIRADLRQSFPMQRLLQGDVGSGKTVVAALAAAQA 338 Query: 654 VMGGKQVAILAPTTLLAEQHAQTFADRFANWPVRIAELSRFRTGKEITQAIKGMADGTLD 713 + G Q ++APT +LAEQH + A V +A LS + KE T+A+ + G Sbjct: 339 IDSGCQAVLMAPTEILAEQHFRKIAAWMEPLDVGVAWLSGSQKKKEKTEALAHIESGAAR 398 Query: 714 IIIGTHKLLSDDVKFSRLGLVIIDEEHRFGVRQKEALKSLR---AEVDV------LTLTA 764 ++IGTH L+ D V+F LGLVI+DE+HRFGV Q+ AL++ A+ D L ++A Sbjct: 399 LVIGTHALIQDTVQFENLGLVIVDEQHRFGVGQRLALRNKSFNPADHDSPAVPHQLMMSA 458 Query: 765 TPIPRTLGMALEGLRDFSIIATAPQKRLAIKTFV-----RAEGESTIREACLRELKRGGQ 819 TPIPRTL M + S+I P R I T V R E + A L G Q Sbjct: 459 TPIPRTLAMTYYADLEVSVIDELPPGRSPIVTRVIDQNRRDEVIERVHAAAL----EGKQ 514 Query: 820 VYFLHN--------EVDTIENRKAMLEALLPEARVVIAHGQMHERDLEKVMRDFVAQRSN 871 +Y++ ++ T + A L A LP+ ++ + HG+M + + VM F + Sbjct: 515 IYWVCPLIEESEALQLQTATDTHAALSAALPDLQIGLVHGRMKPVEKQMVMEGFSRGAIH 574 Query: 872 ILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVNDVKGLT 931 +L+ TT+IE G+DVP A+ +++ A++FGL+QLHQLRGRVGR + LL G T Sbjct: 575 LLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASVCLLLYQGPLGGT 634 Query: 932 KQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDSQSGE 974 A++RL M E GF +A DL+IRG GE LG QSGE Sbjct: 635 --AKQRLAT---MRETTDGFEIARRDLDIRGPGEFLGARQSGE 672 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,562,489 Number of extensions: 153952 Number of successful extensions: 449 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 446 Number of HSP's successfully gapped: 2 Length of query: 1151 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1055 Effective length of database: 1,165,310 Effective search space: 1229402050 Effective search space used: 1229402050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)