BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0026.p (302 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate A... 497 e-142 gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte... 251 5e-68 gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporte... 236 1e-63 gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate A... 236 2e-63 gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate A... 116 2e-27 >gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 323 Score = 497 bits (1279), Expect = e-142, Method: Compositional matrix adjust. Identities = 236/293 (80%), Positives = 266/293 (90%) Query: 10 AAEERTLRIGYQKFNTLNILKGTGNLEKALAPLGWKVKWFEFAAGPQLTEALNADAIDFG 69 AA ++ LRIGYQKFNTLNILKG+G LE+AL P GW VKWFEFAAGPQLTEALNA+AID G Sbjct: 31 AAADKVLRIGYQKFNTLNILKGSGKLEQALQPQGWSVKWFEFAAGPQLTEALNANAIDLG 90 Query: 70 HAADTPSVFANASGVNAVYLAAEQPYPKGIGIFVAQDSPIRSIKELKGKKVALGRGWNVQ 129 HAADTPSVFANASGVNAVYL AEQPYPKGIGIFVAQ+SPIRS+ +LKGKKVA GRGWNVQ Sbjct: 91 HAADTPSVFANASGVNAVYLGAEQPYPKGIGIFVAQESPIRSVADLKGKKVATGRGWNVQ 150 Query: 130 YLLVRALEEAGLSYNDIVPVYLSNAADVRATFQSGNVDAAGLWDPFLAGQEISTRPRILR 189 +LL++ALEE GLSY DI PVY++NAADVRA FQSGNVDAA LWDPFLAGQE++TRPRILR Sbjct: 151 FLLLKALEEVGLSYRDIEPVYVTNAADVRAAFQSGNVDAATLWDPFLAGQELATRPRILR 210 Query: 190 DGTGLSNNRTFHLATPKFADQNKNIIRVLFAELKKTNNWTQAHPQETADLLAPQLGVDPK 249 DGTGLSNNRTFHLA P F D++K+I+R +FAELKKTN WTQ+HPQETA+LLAPQLGVDPK Sbjct: 211 DGTGLSNNRTFHLAVPSFVDRHKDIVRTVFAELKKTNQWTQSHPQETAELLAPQLGVDPK 270 Query: 250 VLRLATERRDYTTVPINAGIIQEQQQIVEAFYKLGLIKNQVQVKDKVYGEALL 302 VLRLATERR+YTTV ++AGI+ EQQQI +AF KLGLIKN V+V+DKVY E L+ Sbjct: 271 VLRLATERRNYTTVAVDAGIVAEQQQIADAFLKLGLIKNPVRVQDKVYPEVLV 323 >gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 251 bits (641), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 131/289 (45%), Positives = 180/289 (62%), Gaps = 2/289 (0%) Query: 9 NAAEERTLRIGYQKF-NTLNILKGTGNLEKALAPLGWKVKWFEFAAGPQLTEALNADAID 67 A E + LRIGYQK NTL +LK G LEK L PLG +VKW EFAAGPQL EALN ++D Sbjct: 38 QAQETKLLRIGYQKAANTLVLLKAHGTLEKRLQPLGVEVKWAEFAAGPQLLEALNVGSVD 97 Query: 68 FGHAADTPSVFANASGVNAVYLAAEQPYPKGIGIFVAQDSPIRSIKELKGKKVALGRGWN 127 FG+ + P VFA A+G + VY A E P P G+ V ++SPI+S+ ELKGKK+A +G + Sbjct: 98 FGYVGEAPPVFAQAAGADFVYTAYEIPTPDAEGLLVQKNSPIKSVAELKGKKIAFNKGSD 157 Query: 128 VQYLLVRALEEAGLSYNDIVPVYLSNAADVRATFQSGNVDAAGLWDPFLAGQEISTRPRI 187 V +L+V L++AGL Y+DI PVYL+ AD RA F+ G VDA +WDPF A E R Sbjct: 158 VHWLVVALLKKAGLQYSDIQPVYLA-PADARAAFERGAVDAWAIWDPFQAAAEKQVGARR 216 Query: 188 LRDGTGLSNNRTFHLATPKFADQNKNIIRVLFAELKKTNNWTQAHPQETADLLAPQLGVD 247 L G G N+ F L+ FA +N + ++L E+ + W + H + A LAP G+D Sbjct: 217 LATGVGAVNHHQFFLSARPFAAKNPQVEKILLEEISREGEWVRTHTAQAAAQLAPIQGLD 276 Query: 248 PKVLRLATERRDYTTVPINAGIIQEQQQIVEAFYKLGLIKNQVQVKDKV 296 ++ +R + P++A ++ EQQ+I +AFY+L LI ++V D V Sbjct: 277 ADIIETGLKRYAHVYKPVDAQVLAEQQKIADAFYELKLIPKPLKVSDAV 325 >gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 336 Score = 236 bits (603), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 122/287 (42%), Positives = 173/287 (60%), Gaps = 2/287 (0%) Query: 6 GWSNAAEERTLRIGYQKFNTLNILKGTGNLEKALAPLGWKVKWFEFAAGPQLTEALNADA 65 W +AA R LR+GYQK L++++ G LE+ LAPLG VKW EF+AGP EAL A + Sbjct: 43 AWVHAAAPRQLRVGYQK-GALSLIRAHGVLEQRLAPLGATVKWVEFSAGPVQLEALGAGS 101 Query: 66 IDFGHAADTPSVFANASGVNAVYLAAEQPYPKGIGIFVAQDSPIRSIKELKGKKVALGRG 125 IDFG + P +FA A+G VY+ A P P + V DS ++ ++LKGK++AL +G Sbjct: 102 IDFGDVGEAPPIFAQAAGTPLVYVGATVPRPYVEAVLVKDDSELQRPQQLKGKRIALNKG 161 Query: 126 WNVQYLLVRALEEAGLSYNDIVPVYLSNAADVRATFQSGNVDAAGLWDPFLAGQEISTRP 185 NV Y LV+ LE+ GL Y D+ PV+L+ AD RA F+ G VDA +W+P+LA + + Sbjct: 162 SNVHYFLVKLLEKHGLKYGDVTPVWLA-PADARAAFERGAVDAWAIWEPYLAAAQQGLKA 220 Query: 186 RILRDGTGLSNNRTFHLATPKFADQNKNIIRVLFAELKKTNNWTQAHPQETADLLAPQLG 245 RIL D G+ NR ++ +T +A + +++R+ EL K + W QA P E A LA LG Sbjct: 221 RILADADGVVKNRAYYFSTRDYARDHADLLRIALEELGKIDAWAQARPDEYASELAGILG 280 Query: 246 VDPKVLRLATERRDYTTVPINAGIIQEQQQIVEAFYKLGLIKNQVQV 292 + VL + R Y T+PI I+ EQQQI + F L LI ++ + Sbjct: 281 LPRSVLDVVVRRYHYGTLPITRAILDEQQQIADTFLDLRLIPRKISL 327 >gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 236 bits (602), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 124/283 (43%), Positives = 171/283 (60%), Gaps = 3/283 (1%) Query: 14 RTLRIGYQKFNTL-NILKGTGNLEKALAPLGWKVKWFEFAAGPQLTEALNADAIDF-GHA 71 + +RIGYQK +TL ILK G LEK LAP G K+ W EFA+G L EALN +D Sbjct: 37 KAIRIGYQKSSTLLTILKANGTLEKLLAPTGAKISWHEFASGLPLLEALNVGGVDLSADV 96 Query: 72 ADTPSVFANASGVNAVYLAAEQPYPKGIGIFVAQDSPIRSIKELKGKKVALGRGWNVQYL 131 ADT VFA A+G Y+A E P P I V DS +R +LKGKK+A+ + V YL Sbjct: 97 ADTVPVFAQAAGAKLAYVAQESPSPAAQAIVVRADSVLRKASDLKGKKIAVTKAAGVHYL 156 Query: 132 LVRALEEAGLSYNDIVPVYLSNAADVRATFQSGNVDAAGLWDPFLAGQEISTRPRILRDG 191 L+ LE+AGL ++D+ YLS A D RA F+ G+VDA WDPFLAG + ++ RIL DG Sbjct: 157 LIATLEKAGLKFSDVDAAYLSPA-DGRAAFERGSVDAWVTWDPFLAGVQRQSQVRILSDG 215 Query: 192 TGLSNNRTFHLATPKFADQNKNIIRVLFAELKKTNNWTQAHPQETADLLAPQLGVDPKVL 251 G+++ + ++LA+ FA ++RV+F EL+KT +W + HP+E A LAP G+D + Sbjct: 216 RGVADYQRYYLASASFAQARPEVLRVVFDELQKTGHWVKQHPKEAAAFLAPLWGLDADTI 275 Query: 252 RLATERRDYTTVPINAGIIQEQQQIVEAFYKLGLIKNQVQVKD 294 LA RR Y + + EQQ+I + F+ GL+ ++ D Sbjct: 276 ELANSRRSYEVRAVRPEALGEQQRIADTFFAAGLLPRKINTND 318 >gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 116 bits (290), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/284 (30%), Positives = 145/284 (51%), Gaps = 8/284 (2%) Query: 8 SNAAEERTLRIGYQKFNTLN-ILKGTGNLEKALAPLGWKVKWFEFAAGPQLTEALNADAI 66 S A + +R+ Y ++ + +L+ G LE+ L G +VKW + E LN+D++ Sbjct: 27 SAAQPPKVIRLDYAYYSPPSLVLRKFGWLEEDLKAQGTEVKWVLSQGSNRALEYLNSDSV 86 Query: 67 DFGHAADTPSVFANASG--VNAVYLAAEQPYPKGIGIFVAQDSPIRSIKELKGKKVALGR 124 DFG A ++ A A+G V AVY+ + P+ + V ++SP++SI ELKGKK+A + Sbjct: 87 DFGSTAGLAALLARANGNPVKAVYIYSR---PEWTALAVGKESPVKSINELKGKKIAATK 143 Query: 125 GWNVQYLLVRALEEAGLSYNDIVPVYLSNAADVRATFQSGNVDAAGLWDPFLAGQEISTR 184 G + L+RAL E GL +D+ V+L + AD RA + G V A DP LA E+ Sbjct: 144 GTDPYLFLLRALHENGLKKSDVEIVHLQH-ADGRAALEQGRVAAWAGLDPHLAASELEAG 202 Query: 185 PRILRDGTGLSNNRTFHLATPKFADQNKNIIRVLFAELKKTNNWTQAHPQETADLLAPQL 244 R++ N F + FA ++ + ++ + A ++ +W AHP ET LL+ + Sbjct: 203 SRLIYRNVNF-NTYGFLNVSDSFAARHPDQVKRVIAAYERARSWIIAHPDETVALLSEES 261 Query: 245 GVDPKVLRLATERRDYTTVPINAGIIQEQQQIVEAFYKLGLIKN 288 + V RL +R D++ I I+ + + L+K+ Sbjct: 262 KLSAPVARLQLKRNDFSQPQIGREHIEALRAAAPILLEEDLVKS 305 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 981,772 Number of extensions: 42585 Number of successful extensions: 139 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 7 Length of query: 302 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 217 Effective length of database: 1,217,395 Effective search space: 264174715 Effective search space used: 264174715 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)