BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0023.p (377 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Her... 301 4e-83 gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Her... 298 4e-82 gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Her... 296 2e-81 >gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 487 Score = 301 bits (772), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 156/342 (45%), Positives = 214/342 (62%), Gaps = 11/342 (3%) Query: 9 FSDLNLSEPLLRVLKELGYESPSPIQAATIPILLSNRDVLGQAQTGTGKTAAFALPILSR 68 F D LS +L+ L E GY P+PIQA IP++L RDV+G AQTGTGKTA F+LPI+ R Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77 Query: 69 I---------DIRQTVPQALVLAPTRELAIQVAEAFQRYATHIPGFHVLPIYGGQSYGPQ 119 + R V +AL+L PTRELA QVA+ Y P ++GG PQ Sbjct: 78 LLQHASHSASPARHPV-RALILTPTRELADQVADNVAAYCRFTP-LRSTVVFGGVDMAPQ 135 Query: 120 LSALRRGVHVVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADEMLRMGFIDDVESILQKTP 179 + LR GV +V+ TPGR++DH+ + +++LSQ + +V+DEAD ML MGF+ D++ I+ P Sbjct: 136 TAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP 195 Query: 180 ATRQTTLFSATMPSAIKRIAQTYLRDPAEVTIAAKTGTAENIRQRYWLVSGMHKLDALTR 239 RQ LFSAT IK++A ++ +P + +A TAEN+ Q + V K DA++ Sbjct: 196 KQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSF 255 Query: 240 ILEVEPFDGLIIFSRTKLGTEELAGKLKARGFAAAAINGDIQQQQRERTIQQLKDGQIDI 299 I+ +I+FS TK+G LA L A G A+AI+GD Q +R ++ K GQI++ Sbjct: 256 IIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEV 315 Query: 300 LIATDVAARGLDVERISHVINYDVPYDPESYTHRIGRTGRAG 341 L+ATDVAARGLD+ + VINYD+PY+ E Y HRIGRTGRAG Sbjct: 316 LVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAG 357 >gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 298 bits (764), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 152/340 (44%), Positives = 220/340 (64%), Gaps = 8/340 (2%) Query: 9 FSDLNLSEPLLRVLKELGYESPSPIQAATIPILLSNRDVLGQAQTGTGKTAAFALPILSR 68 FS L LS+ ++R + E GY SP+PIQA +P +LS D+L AQTGTGKTA F LP+L R Sbjct: 3 FSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQR 62 Query: 69 ID------IRQTVP-QALVLAPTRELAIQVAEAFQRYATHIPGFHVLPIYGGQSYGPQLS 121 + I VP +AL+LAPTRELA QV E+ ++Y ++P I+GG PQ++ Sbjct: 63 LSAMPRQKINGHVPIRALILAPTRELAAQVEESVRQYGKYLP-LTSACIFGGVGINPQIT 121 Query: 122 ALRRGVHVVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADEMLRMGFIDDVESILQKTPAT 181 L+RGV ++V TPGR++DH+ +G+++L ++ +VLDEAD ML MGFI D+ +L P Sbjct: 122 LLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPPK 181 Query: 182 RQTTLFSATMPSAIKRIAQTYLRDPAEVTIAAKTGTAENIRQRYWLVSGMHKLDALTRIL 241 RQ LFSAT IK++A + L +PA + +A + T E I Q+ V K L ++ Sbjct: 182 RQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAHLI 241 Query: 242 EVEPFDGLIIFSRTKLGTEELAGKLKARGFAAAAINGDIQQQQRERTIQQLKDGQIDILI 301 + + +++F+RTK G +L +L G A AI+G+ Q R + + + KDG++ LI Sbjct: 242 KTHQWKQVLVFTRTKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGKLTALI 301 Query: 302 ATDVAARGLDVERISHVINYDVPYDPESYTHRIGRTGRAG 341 ATD+AARG+D++++ HV+NYD+P PE Y HRIGRTGRAG Sbjct: 302 ATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAG 341 >gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 510 Score = 296 bits (757), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 160/363 (44%), Positives = 216/363 (59%), Gaps = 28/363 (7%) Query: 9 FSDLNLSEPLLRVLKELGYESPSPIQAATIPILLSNRDVLGQAQTGTGKTAAFALPILSR 68 F L L+ +++ L E GY SP+P+Q IP +S +D+L +QTG+GKTAAF LP L + Sbjct: 3 FEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSLHQ 62 Query: 69 IDIRQTVPQA---------------------------LVLAPTRELAIQVAEAFQRYATH 101 + PQA LVL PTRELA+QV A +Y + Sbjct: 63 LADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYGAY 122 Query: 102 IPGFHVLPIYGGQSYGPQLSALRRGVHVVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADE 161 + V+ I GG Y Q+ L R ++V TPGR+IDH++ G +D SQL+ +VLDEAD Sbjct: 123 MRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEADR 182 Query: 162 MLRMGFIDDVESILQKTPATRQTTLFSATMPSAIKRIAQTYLRDPAEVTIAAKTGTAENI 221 ML MGFIDD+E I+ TPATRQT LFSAT+ + +A+ +P + IA+ + ENI Sbjct: 183 MLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHENI 242 Query: 222 RQRYWLVSGM-HKLDALTRILEVEPFDGLIIFSRTKLGTEELAGKLKARGFAAAAINGDI 280 QR V + HK L +L D +IF+ TK + +A +L GFAAAA++GD+ Sbjct: 243 MQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHGDM 302 Query: 281 QQQQRERTIQQLKDGQIDILIATDVAARGLDVERISHVINYDVPYDPESYTHRIGRTGRA 340 Q R RT+ L+ GQ+ +L+ATDVAARG+DV I+HV NYD+P E Y HRIGRTGRA Sbjct: 303 HQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTGRA 362 Query: 341 GRD 343 GR+ Sbjct: 363 GRN 365 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,144,902 Number of extensions: 48773 Number of successful extensions: 188 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 3 Length of query: 377 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 290 Effective length of database: 1,207,925 Effective search space: 350298250 Effective search space used: 350298250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)