BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0016.p
         (316 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313994|ref|YP_003778086.1| hypothetical protein Hsero_4712...   328   3e-91

>gi|300313994|ref|YP_003778086.1| hypothetical protein Hsero_4712
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  328 bits (842), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 151/198 (76%), Positives = 171/198 (86%)

Query: 21  WRIADLDFSRIDRQRVRDDENTFYLVTCASFVESGSDLYTHNLVDFFHDNEKVAAWLREQ 80
           W I D+DFSRID  RVR DE+ FYLV CASFVESGSDLYTHNLV+++  + +V  WLREQ
Sbjct: 11  WTIEDIDFSRIDLARVRQDEDLFYLVACASFVESGSDLYTHNLVEYYKGDAEVETWLREQ 70

Query: 81  WEVEELQHGAALRAYVEHVWPEFDWQQAYDSFLAEYADYCKVELLEPTKALEMAARCVVE 140
           WE EELQHGAALRAYVEHVWPEFDWQ+AY  FL EY+ YCKVELLEPT+A E+AARCVVE
Sbjct: 71  WEQEELQHGAALRAYVEHVWPEFDWQRAYQGFLDEYSQYCKVELLEPTRAQELAARCVVE 130

Query: 141 TGTATYYRALSRSVQEPVLQELAARISNDEVNHYKHFYQYFRQYRRREGIGRSRVLGTLS 200
           TGT+TYYRAL+R+  EPVL++LA  I+NDEVNHYKHFY YFR+YRR E IGRSRV GTLS
Sbjct: 131 TGTSTYYRALARATDEPVLKQLAGLIANDEVNHYKHFYHYFRRYRREENIGRSRVFGTLS 190

Query: 201 RRTLEMRNEDADCAIRHA 218
           RRTLE++NEDADCAIRH 
Sbjct: 191 RRTLELKNEDADCAIRHV 208


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 781,143
Number of extensions: 27159
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,217,395
Effective search space: 281218245
Effective search space used: 281218245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)