BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0014.p (527 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313996|ref|YP_003778088.1| urea ABC transporter permease [... 916 0.0 gi|300311946|ref|YP_003776038.1| branched-chain amino acid ABC t... 229 4e-61 gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC t... 136 5e-33 gi|300313286|ref|YP_003777378.1| branched-chain amino acid ABC t... 109 5e-25 gi|300312954|ref|YP_003777046.1| amino acid ABC transporter perm... 106 4e-24 >gi|300313996|ref|YP_003778088.1| urea ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 538 Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/528 (88%), Positives = 490/528 (92%), Gaps = 1/528 (0%) Query: 1 LLTGWLCTQAISAHAAIDPALLKPLAGDDPDARIAAVTQIAALANADAQKILNAINSDAL 60 LL WLC A++A AAIDPALLKPL GDDPDARI AV QIAALAN DA KILNA+NSDAL Sbjct: 11 LLATWLCVHALAASAAIDPALLKPLGGDDPDARIDAVNQIAALANDDALKILNALNSDAL 70 Query: 61 YATPAGDVLIIEDS-DAFNPATDKTGPAPDDAEGITVNNRLRGVVEGALSGLKLFSPDRA 119 Y TPAGDVLI++++ AFNPATDK+GPAPDDAEGITVNNRLRG V+GALSGLKL SP R Sbjct: 71 YVTPAGDVLIVDEAGQAFNPATDKSGPAPDDAEGITVNNRLRGAVDGALSGLKLLSPQRE 130 Query: 120 TRLTAATELLKTADAAQTPLISKALAAEKDPQIQEVLKQVVATANLHAPDAATRKAAVKA 179 RL AA ELLK AD AQ PLI KALA E D QI++VL+QV ATANLH+PD A R+AAVK Sbjct: 131 QRLAAANELLKNADPAQIPLIVKALAKESDAQIKDVLQQVQATANLHSPDPAARRAAVKT 190 Query: 180 LAETTNASLKPVLEQMLAKNPDGSYVEADEGVRIEAVRTVSALDRHLTITEFVGKLFYGV 239 LA+TTNASLKP LE MLAK+PDGSYVE DEGVR+EAVRT++ALDRHL I +F GKLFYGV Sbjct: 191 LADTTNASLKPALENMLAKHPDGSYVEPDEGVRVEAVRTLAALDRHLAIVDFAGKLFYGV 250 Query: 240 SLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYIVVA 299 SLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAY+VVA Sbjct: 251 SLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYLVVA 310 Query: 300 LPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQAVRSIFGAQNVEVANPS 359 LPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQ VRSIFGAQNVEVANPS Sbjct: 311 LPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQGVRSIFGAQNVEVANPS 370 Query: 360 WMSGGITVLGSLVLSYNRIVIIFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGV 419 WMSGG+TVLGSLVLSYNRIVI+FFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGV Sbjct: 371 WMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGV 430 Query: 420 STGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIA 479 STGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIA Sbjct: 431 STGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIA 490 Query: 480 AFGLGEVNKFLEPVAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 527 AFGLGEVNKFLEP+AGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE Sbjct: 491 AFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 538 >gi|300311946|ref|YP_003776038.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 229 bits (584), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 127/289 (43%), Positives = 176/289 (60%) Query: 236 FYGVSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAY 295 F G+S+ VLLL ALGLAI FG MG+INMAHGE L IGAY TY+ + + P Y Sbjct: 4 FNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPALQPFY 63 Query: 296 IVVALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQAVRSIFGAQNVEV 355 VA+ +F VA VG E L+I LY RPL+TLL TWG+SL + Q RSIFGA+ V Sbjct: 64 FFVAIVLSFAVAYGVGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKEVSA 123 Query: 356 ANPSWMSGGITVLGSLVLSYNRIVIIFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMAD 415 P W+ G + + N + ++ + + A++++L ++R GL VRA QNR M+ Sbjct: 124 TLPDWLMGSFKPTDDIDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQVRATMQNRVMSG 183 Query: 416 CVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAG 475 VG++T K+D TF LGCG+AG+ G A + +G+ GP G YIVD+F+VVV GG L G Sbjct: 184 AVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQSLIG 243 Query: 476 TVIAAFGLGEVNKFLEPVAGAVLAKIAILVFIIVFIQKRPQGLFALKGR 524 T+ +AF + + E +AK+ L +I+ + RPQGLF++K R Sbjct: 244 TIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVKVR 292 >gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 136 bits (342), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 94/279 (33%), Positives = 149/279 (53%), Gaps = 11/279 (3%) Query: 242 GSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYIVVALP 301 GS + +LGLA+ FGL+ +IN AHG L M+GA+ ++ + V L Sbjct: 22 GSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMGL--------SYLGLNYWVMLI 73 Query: 302 AAFIVAAAVGIALERLVIRWLYGR-PLETLLCTWGISLMLMQAVRSIFGAQNVEVANPSW 360 A I+ A GI +E+ ++RWLY L LL T+GI+LM+ RSI+G + P Sbjct: 74 VAPILVGAFGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSIYGVSGQPYSVPDL 133 Query: 361 MSGGITVLGSLVLSYNRIVIIFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGVS 420 + G T LG +VL R ++ +L V FA W ++ KTRLG ++RA T+N ++ + G++ Sbjct: 134 LQGA-TNLGFMVLPNYRAWVVVASLIVCFATWFVIEKTRLGAYLRAGTENPKLVEAFGIN 192 Query: 421 TGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAA 480 + +T+G G +A GV + + V P +G I+ F VVV+GG+G + G++I Sbjct: 193 VPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGSILGSIITG 252 Query: 481 FGLGEVNKFLEPVAGAVLAKIAILVFIIVFIQKRPQGLF 519 LG + L V L+ + + + + + RP GLF Sbjct: 253 LVLGLIEG-LTRVFYPELSATVVFIIMAIVLMVRPAGLF 290 >gi|300313286|ref|YP_003777378.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 109 bits (273), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 100/298 (33%), Positives = 159/298 (53%), Gaps = 17/298 (5%) Query: 230 EFVGKLFYGVSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFP 289 F+G LF G++ GS+L L ++GL++T G+M IN+AHG M+G YVC + Sbjct: 4 NFLGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGG---YVCVTLLN---- 56 Query: 290 GAIDAYIVVALPAAFIVAAAVGIALERLVIRWLY-GRPLETLLCTWGISLMLMQAVRSIF 348 + + LP AFI AA VG+ LER + R LY L+ +L + G++ M + + Sbjct: 57 -GMGVPFLATLPLAFIAAAIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQW 115 Query: 349 GAQNVEVANPSWMSGGITVLGSLVLSYNRIVIIFFALFVVFAVWLILNKTRLGLFVRAVT 408 G V P W+ G I++LG V +Y R+ +I + V A+ L++ +TR G +RA Sbjct: 116 GPTQQPVVLPDWLRGQISLLGLEVGAY-RVFLIGVVVIVTVALGLLIERTRFGAQIRASV 174 Query: 409 QNRRMADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLG 468 N+ A +G++ ++ +TF LG G+AGLGG + + P Y+V +VV +G Sbjct: 175 DNQVAAAGLGINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVG 234 Query: 469 GVGQLAGTVIAAFGLGEVN---KFLEPVAGAVLAKIAILVFIIVFIQKRPQGLFALKG 523 G G + G ++AA LG + K+ P GA + ++V +I+F P GL +G Sbjct: 235 GAGTIKGPLLAALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILF----PAGLMRRRG 288 >gi|300312954|ref|YP_003777046.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 304 Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 151/298 (50%), Gaps = 27/298 (9%) Query: 239 VSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYIVV 298 + G +L L A GL + FG+M +N+AHG MIGAY V F+ G ++V Sbjct: 13 LQFGVMLFLIASGLTLIFGVMNFVNLAHGSFFMIGAYVAAVVAGASGSFWLG-----LLV 67 Query: 299 ALPAAFIVAAAVGIALERLVIRWLYGR-PLETLLCTWGISLMLMQAVRSIFGAQNVEVAN 357 ALPA AA+G LE +V R LY + + +L T+ L+ VR I+G Q + + Sbjct: 68 ALPAT----AALGFLLEWVVFRRLYQKDHMVQVLATFAFILIFNDGVRMIWGPQPLPLNM 123 Query: 358 PSWMSGGITVLGSLVLSYNRIVIIFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCV 417 P+ +G + + G SY R++++ + V A++ ++N+TR+G++VRA N M + Sbjct: 124 PAAFAGPVNLFGLPYSSY-RLLVMAVGVVVAIALYFLINRTRIGMWVRAGANNLEMVTAM 182 Query: 418 GVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTV 477 G++ + + F G +A L G+ L L V +G ++ +F+VVV+GG+G + G Sbjct: 183 GINIRLLFRLVFSFGLLLAALAGIMLGPLVAVQAGMGDDVLILAFVVVVIGGIGSVPGAA 242 Query: 478 IAAFGLGEVNK------------FLEPVA----GAVLAKIAILVFIIVFIQKRPQGLF 519 I A +G V+ FL A G L + I + +I + RP GLF Sbjct: 243 IGALIVGVVDTLGRSLLPQLFALFLSADAAASVGPALGSMMIYLVMIAVLFWRPSGLF 300 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,291,930 Number of extensions: 43695 Number of successful extensions: 250 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 231 Number of HSP's successfully gapped: 19 Length of query: 527 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 437 Effective length of database: 1,193,720 Effective search space: 521655640 Effective search space used: 521655640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)