BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0013.p (374 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313997|ref|YP_003778089.1| urea transport system, permease... 642 0.0 gi|300311945|ref|YP_003776037.1| branched-chain amino acid ABC t... 231 5e-62 gi|300314069|ref|YP_003778161.1| amino acid ABC transporter perm... 99 8e-22 gi|300312953|ref|YP_003777045.1| amino acid ABC transporter perm... 95 9e-21 gi|300313933|ref|YP_003778025.1| branched-chain amino acid ABC t... 82 1e-16 >gi|300313997|ref|YP_003778089.1| urea transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 376 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/378 (86%), Positives = 351/378 (92%), Gaps = 6/378 (1%) Query: 1 MSTLNLPLKPSLFSRPAWIAIVVFTVILGLLPILNLILPAGHPLSISSYTIALIGKFMCY 60 MST+ ++PSLF+RPAW IV+ T++L LLP+ NL+ PAG L +SSYT+AL+GKFMCY Sbjct: 1 MSTM--IMRPSLFNRPAWTGIVICTIVLALLPVCNLLFPAGSALHVSSYTVALVGKFMCY 58 Query: 61 AMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGHDGVYQSDLPDFMVFLNWK 120 AMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIG DGVYQSDLPDFMVFLNWK Sbjct: 59 AMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQSDLPDFMVFLNWK 118 Query: 121 AYPWYWWMTEHFWFAMLLVVLVPGVLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFF 180 AYPWYWWMT+HFWFAMLLVVLVPG+LAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFF Sbjct: 119 AYPWYWWMTDHFWFAMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFF 178 Query: 181 RNDTGFGGNNGFTDFKRILGYTITAPSTKAVLYLVTLAFLLGSLLLCRAIVTSKLGRVLQ 240 RNDTGFGGNNGFTDFKRILG+TITAP+TKAVLYLVTL L G+L+LCR IVTSKLGRVLQ Sbjct: 179 RNDTGFGGNNGFTDFKRILGFTITAPATKAVLYLVTLGLLFGALVLCRMIVTSKLGRVLQ 238 Query: 241 GVRDSESRLMFIGYNPLWFKLFVWTLSAVLCGIAGALYVPQVGIINPSEMSPANSIEMVI 300 GVRDSESRLMFIGYNPLWFKLFVWTLSAV+CGIAGALYVPQVGIINPSEMSPANSIEMVI Sbjct: 239 GVRDSESRLMFIGYNPLWFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVI 298 Query: 301 WAAVGGRGSLLGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLIKK 360 WAAVGGRG+L+GPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGL++K Sbjct: 299 WAAVGGRGTLIGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQK 358 Query: 361 LKKQD----PQDRIKEAA 374 KK+D KEAA Sbjct: 359 FKKRDAVAAEGSASKEAA 376 >gi|300311945|ref|YP_003776037.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 401 Score = 231 bits (590), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 136/326 (41%), Positives = 188/326 (57%), Gaps = 4/326 (1%) Query: 43 PLSISSYTIALIGKFMCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLM----R 98 PL++ + + L+GK++ YA A+ L L WGY GILSLG GVFF LGGY M+L Sbjct: 30 PLTLDMFRLNLVGKYLSYAFVAVGLVLCWGYGGILSLGQGVFFGLGGYCMAMFLKLEASD 89 Query: 99 AIGHDGVYQSDLPDFMVFLNWKAYPWYWWMTEHFWFAMLLVVLVPGVLAFVFGYFAFRSR 158 I +PDFM + A P W F F + V+ VP VLA + G F+ R Sbjct: 90 PISTKIQSTPGIPDFMDWNQITALPAMWEPFHSFAFTIFAVLAVPTVLAMLIGMAMFKRR 149 Query: 159 IKGVYFSIITQAMTFAFMLLFFRNDTGFGGNNGFTDFKRILGYTITAPSTKAVLYLVTLA 218 + VYFSI+TQA+ +L GG NG TD K ++G+ I K VLY V Sbjct: 150 VGDVYFSIVTQAIAAILSILIIGQQGLTGGVNGITDLKTLMGWDIRTDHAKLVLYFVNAG 209 Query: 219 FLLGSLLLCRAIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVLCGIAGALY 278 L G +L R ++ SKLGR+L +RD E R+ F GY+ FK+FV+ +A+ I GA++ Sbjct: 210 LLFGCILFGRYVLGSKLGRLLVAMRDKEERVRFSGYDVASFKVFVFCAAAMFSAIGGAMF 269 Query: 279 VPQVGIINPSEMSPANSIEMVIWAAVGGRGSLLGPIIGAFTVNGLKSWFTAAFPDLWLYA 338 QVG ++PS + SIEMVI+AAVGGR SLLG + G VN K++F+ FP+LWL+ Sbjct: 270 TLQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLGAVYGTLLVNFGKTYFSETFPELWLFL 329 Query: 339 LGLIFILVTLFLPQGILGLIKKLKKQ 364 +G +FI V ++ P G+ GL + K+ Sbjct: 330 MGGLFIAVVMYFPNGLAGLWQTQGKR 355 >gi|300314069|ref|YP_003778161.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 326 Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 93/327 (28%), Positives = 148/327 (45%), Gaps = 53/327 (16%) Query: 56 KFMCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGHDGVYQSDLPDFMV 115 K +C+A+ A A +L+ GYTG+LS GH F GY G Sbjct: 28 KMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYMCG---------------------- 65 Query: 116 FLNWKAYPWYWWMTEHFWFAMLLVVLVPGVLAFVFGYFAFRSRIKGVYFSIITQAMTFAF 175 +A + TE +++ L ++ V G A R +G+YF++IT A+ A Sbjct: 66 ----QALKVWGLPTE---LGLIIGTLTGALIGLVMGLLAIRR--QGIYFTMITLAL--AQ 114 Query: 176 MLLFFRNDTGF-GGNNGFTDFKR--ILGYTITAPSTKAVLYLVTLAFLLGSLLLCRAIVT 232 ML F F GG +G R +LG+ + LY V LA + L + Sbjct: 115 MLFFVALQAPFTGGEDGLQGVPRGKLLGFL--NLESDMTLYYVVLAIAVAGFALIVRTIH 172 Query: 233 SKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVLCGIAGALYVPQVGIINPSEMSP 292 S G+VL+ ++++E R + +GY+ +KL + LSA L G+AGA +G +++ Sbjct: 173 SPFGQVLKAIKENEPRAISLGYDVARYKLLAFVLSAGLSGLAGATKTLVLGFETLTDVHW 232 Query: 293 ANSIEMVIWAAVGGRGSLLGPIIGAFTV-------NGLKSWFTAAFPDLWLYAL------ 339 + S +V+ VGG G++LGPI+GA + + +W + W L Sbjct: 233 SMSGLVVLMTLVGGLGTILGPIVGAVIIIMLENKLGDIGAWLASVTHIDWFNTLGDSVTI 292 Query: 340 --GLIFILVTLFLPQGILGLIKKLKKQ 364 G IFI+ L +GI+G I L ++ Sbjct: 293 VTGFIFIVCVLAFRKGIVGEILALTRK 319 >gi|300312953|ref|YP_003777045.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 317 Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 95/324 (29%), Positives = 150/324 (46%), Gaps = 37/324 (11%) Query: 48 SYTIALIGKFMCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGHDGVYQ 107 Y I ++ + + +AM A +L+ + GY G++S GH VFF LG Y + + Sbjct: 26 EYYIGVLTRILIFAMVAASLNFILGYGGMVSFGHAVFFGLGAYVTAIASFHGV------- 78 Query: 108 SDLPDFMVFLNWKAYPWYWWMTEHFWFAMLLVVLVPGVLAFVFGYFAFRSRIKGVYFSII 167 W W LL LV ++ V G A R+R VYF +I Sbjct: 79 -------------TSAWLIW---------LLAALVTALVGLVIGVIALRTR--AVYFIMI 114 Query: 168 TQAMTFAFMLLFFRNDTGFGGNNGFTDFKR-ILGYTITAPSTKAVLYLVTLAFLLGSLLL 226 T A+ F FF +GG++G R +LG+ + A Y V LA+L S +L Sbjct: 115 TMALAQLFYY-FFVGFRYYGGDDGLQVTARPLLGFGLDMSGDNA-FYWVVLAWLAASFIL 172 Query: 227 CRAIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVLCGIAGALYVPQVGIIN 286 + ++ S+ G L +R +E R IGY L +KL + ++AV+ GIAG+L + Sbjct: 173 LQRLLASRFGLALNAIRQNERRAQAIGYPALRYKLAAFVIAAVIAGIAGSLIGMSNLFAS 232 Query: 287 PSEMSPANSIEMVIWAAVGGRGSLLGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILV 346 P + + S +++ A+GG G G ++GA L+ + F + W +GLI +LV Sbjct: 233 PKLLHWSQSGILLVMVALGGVGYFYGGLLGAAAFLLLEEVLSTHF-EYWQIYVGLILLLV 291 Query: 347 TLFLPQGILGLIK--KLKKQDPQD 368 + P+G+ L+ K KQ Q Sbjct: 292 VMVAPRGVSSLVSIGKTLKQGEQH 315 >gi|300313933|ref|YP_003778025.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 334 Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 108/212 (50%), Gaps = 7/212 (3%) Query: 155 FRSRIKGVYFSIITQAMTFAFMLLFFRNDTGFGGNNGFTDFKR----ILGYTITAPSTKA 210 F R +G YF ++T A F L + GG+NG D R + G T+ P+T + Sbjct: 100 FSIRQRGTYFVMLTLAFAQMFYFLAYTMKDVTGGDNGLLDIPRPPLALFGLTLL-PTTSS 158 Query: 211 VLYLVTLAFLLGSLL-LCRAIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAV 269 Y +A L + L + +V S LG+ L VR++E+R +GY+ KL + +S Sbjct: 159 WQYYTVVAILFVLVFWLLQRVVDSVLGKTLLAVRENEARASALGYDVRLLKLAAFVISGA 218 Query: 270 LCGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRGSLLGPIIGAFTVNGLKSWFTA 329 + G+AG L+ G+ S + S +++ +GG G+L ++GA + +W + Sbjct: 219 VTGLAGGLHAMMTGVAPLSNIEYHTSEAILVMTVIGGTGNLFASVLGASFYVLVGNWLST 278 Query: 330 AFPDLWLYALGLIFILVTLFLPQGILGLIKKL 361 +P WL LGL+ I V+L++ +G+ GL K+ Sbjct: 279 LWPR-WLMLLGLLLIAVSLYMQKGLFGLAMKI 309 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.145 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,093,834 Number of extensions: 45180 Number of successful extensions: 275 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 267 Number of HSP's successfully gapped: 19 Length of query: 374 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 287 Effective length of database: 1,207,925 Effective search space: 346674475 Effective search space used: 346674475 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)