BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0011.p (145 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313998|ref|YP_003778090.1| urea transport system, ATPase c... 273 4e-75 gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC t... 140 5e-35 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 89 1e-19 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 89 1e-19 gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t... 86 1e-18 >gi|300313998|ref|YP_003778090.1| urea transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 289 Score = 273 bits (698), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 135/145 (93%), Positives = 142/145 (97%) Query: 1 MAMKMDKRVKTTLFARLNSEQIGKIEEILKLIRLNGQENRVAGLLSHGQKQWLEIGMLLM 60 +AMKMDKRVKTTLFARL+SEQIGKIEEILKLIRLNGQE RVAGLLSHGQKQWLEIGMLLM Sbjct: 145 LAMKMDKRVKTTLFARLSSEQIGKIEEILKLIRLNGQEQRVAGLLSHGQKQWLEIGMLLM 204 Query: 61 QEPQLLLLDEPVAGMSDAETVRTAELLNELRGKHSIMVVEHDMGFVEEISQGGKVTVLHE 120 QEPQLLLLDEPVAGMSDAET RTAELLNELRGKHSIMVVEHDMGFVEEI+QGGKVTVLHE Sbjct: 205 QEPQLLLLDEPVAGMSDAETARTAELLNELRGKHSIMVVEHDMGFVEEIAQGGKVTVLHE 264 Query: 121 GAVLAEGTMQQVQSDDRVIEVYLGR 145 G+VLAEG M+QVQS++RVIEVYLGR Sbjct: 265 GSVLAEGNMRQVQSNERVIEVYLGR 289 >gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 140 bits (352), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 72/113 (63%), Positives = 90/113 (79%), Gaps = 2/113 (1%) Query: 32 IRLNGQENRVAGLLSHGQKQWLEIGMLLMQEPQLLLLDEPVAGMSDAETVRTAELLNELR 91 I L Q + A LLSHGQKQWLEIGMLLMQEP+LL+LDEPVAGMS +E +TAELL + Sbjct: 144 IFLEEQLHTQADLLSHGQKQWLEIGMLLMQEPELLMLDEPVAGMSVSEREKTAELLGRIS 203 Query: 92 GKHSIMVVEHDMGFVEEISQGGKVTVLHEGAVLAEGTMQQVQSDDRVIEVYLG 144 S++V+EHDM FV+ I+ KVTVLH+G +LAEG+M++VQSD +VI+VYLG Sbjct: 204 QGRSVVVIEHDMDFVKSIAH--KVTVLHQGKILAEGSMEKVQSDPKVIDVYLG 254 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 89.0 bits (219), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 84/138 (60%), Gaps = 4/138 (2%) Query: 9 VKTTLFARLNSEQIGKIEEILKLIRLNGQENRVAGLLSHGQKQWLEIGMLLMQEPQLLLL 68 +KT + + E + + L + L NR AG LS+G ++ +EI ++ +P+LLLL Sbjct: 121 LKTPAYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLL 180 Query: 69 DEPVAGMSDAETVRTAELLNELRGKH--SIMVVEHDMGFVEEISQGGKVTVLHEGAVLAE 126 DEP AG++ E ++L++ LR +H +++++EHDM + IS ++ V+ G + Sbjct: 181 DEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISD--RILVMEHGKPIVT 238 Query: 127 GTMQQVQSDDRVIEVYLG 144 GT +QV+SD+RVI+ YLG Sbjct: 239 GTPEQVRSDERVIKAYLG 256 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 89.0 bits (219), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 49/120 (40%), Positives = 81/120 (67%), Gaps = 3/120 (2%) Query: 27 EILKLIRLNGQENRVAGLLSHGQKQWLEIGMLLMQEPQLLLLDEPVAGMSDAE-TVRTAE 85 E+L +RL+ + + +A LS+G+++ LE L +P+LLLLDEPVAGM+ AE T +E Sbjct: 133 ELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGMNPAEKTELMSE 192 Query: 86 LLNELRGKHSIMVVEHDMGFVEEISQGGKVTVLHEGAVLAEGTMQQVQSDDRVIEVYLGR 145 ++N + +I ++EHDM FV + + ++ VL+ G ++AEGT Q++++ VIE YLG+ Sbjct: 193 IVNIKQRGFTIFMIEHDMRFVMGLCE--RIAVLNFGKIIAEGTPDQIKNNQEVIEAYLGK 250 >gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 85.5 bits (210), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 74/119 (62%), Gaps = 2/119 (1%) Query: 26 EEILKLIRLNGQENRVAGLLSHGQKQWLEIGMLLMQEPQLLLLDEPVAGMSDAETVRTAE 85 +E+L + L R LSHGQ++ LE+GM + P+++ LDEP +GM + + Sbjct: 131 DELLARLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMGIDDIAEMKQ 190 Query: 86 LLNELRGKHSIMVVEHDMGFVEEISQGGKVTVLHEGAVLAEGTMQQVQSDDRVIEVYLG 144 L++ LR ++++++EH+M V +IS ++TV+ G +LA+G +++SD+RV YLG Sbjct: 191 LIHGLRRDYTVVLIEHNMDIVMDISD--RITVMQLGQILAQGKPAEIRSDERVRRAYLG 247 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 358,173 Number of extensions: 11304 Number of successful extensions: 119 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 32 Length of query: 145 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 68 Effective length of database: 1,255,275 Effective search space: 85358700 Effective search space used: 85358700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)