BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0010.p (237 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [He... 426 e-120 gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC t... 211 6e-56 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 182 3e-47 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 172 3e-44 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 171 3e-44 >gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 232 Score = 426 bits (1094), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/237 (89%), Positives = 222/237 (93%), Gaps = 5/237 (2%) Query: 1 MLQVNQLNQYYGAAHTLRGVSINVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAXDPVAA 60 MLQVN+LNQYYGAAHTLRGVS++V+KGK LSLLGRNGVGKTTLLKCLMGVLPVA Sbjct: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVA-----K 55 Query: 61 GNVTLEGRDITKLKPHQRAGLGIAYVPQGREIFARLTVEENLLMGMATKSGRKASTIKGE 120 GNV EG DITKLKPHQRA LGIAYVPQGREIFARLTVEEN+LMGMAT SGR+AS+IKGE Sbjct: 56 GNVMFEGHDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASSIKGE 115 Query: 121 VYELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRV 180 VYELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRV Sbjct: 116 VYELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRV 175 Query: 181 ISLLRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVASGVQAEMDNENVKKHLAV 237 ISLLRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVA+G Q +MD E+VKKHLAV Sbjct: 176 ISLLRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDGEDVKKHLAV 232 >gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 229 Score = 211 bits (536), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 106/237 (44%), Positives = 158/237 (66%), Gaps = 8/237 (3%) Query: 1 MLQVNQLNQYYGAAHTLRGVSINVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAXDPVAA 60 M +V+QL YG + + V ++V K + ++++GRNG+GKTTL K LMG+LP+ Sbjct: 1 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLR-----G 55 Query: 61 GNVTLEGRDITKLKPHQRAGLGIAYVPQGREIFARLTVEENLLMGMATKSGRKASTIKGE 120 G+++++G ++ L+ HQR G+AYVPQGR IF+ +TV EN+ G+ + K + E Sbjct: 56 GSISIDGVELGSLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGLPAAAKGK---VPDE 112 Query: 121 VYELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRV 180 +Y LFPVL +M R+GG+LSGGQQQQLAIARAL P++++LDEPTEGIQPSIIKDI R Sbjct: 113 LYSLFPVLYDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARS 172 Query: 181 ISLLRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVASGVQAEMDNENVKKHLAV 237 + +R+ + I++ EQ F E+AD F+V+ +G V + +D + K+L+V Sbjct: 173 LKEIRKIRALTIVVSEQVLSFTLEIADRFLVIDKGRFVYEDTRENVDAPTISKYLSV 229 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 182 bits (461), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 99/235 (42%), Positives = 139/235 (59%), Gaps = 6/235 (2%) Query: 1 MLQVNQLNQYYGAAHTLRGVSINVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAXDPVAA 60 +LQV L+ +Y AH L G+ + + G+ ++L+GRNG GK+T LK LMG+L Sbjct: 5 LLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQ----- 59 Query: 61 GNVTLEGRDITKLKPHQRAGLGIAYVPQGREIFARLTVEENLLMGMATKSGRKASTIKGE 120 G + L GRDI KL PHQRA LG+ YVP+ R IF L+V ENL G Sbjct: 60 GQIRLAGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQA 119 Query: 121 VYELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRV 180 ++ELFP L M R GG +SGG+QQ L IAR L+ P+L++LDEP+EG+ P I++ + + Sbjct: 120 LFELFPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAM 179 Query: 181 ISLLRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVASGVQAEMDNENVKKHL 235 I L++ G I ILLCEQ FA + D ++ +G +VA+G A + + L Sbjct: 180 IQELKRSG-IAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQQQSGL 233 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 172 bits (435), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 101/233 (43%), Positives = 144/233 (61%), Gaps = 11/233 (4%) Query: 1 MLQVNQLNQYYGAAHTLRGVSINVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAXDPVAA 60 +LQV ++ YYG +H L+GVS+ V+ G+ ++LLGRNG GKTT LK ++GV+P PV Sbjct: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVP----PVQ- 56 Query: 61 GNVTLEGRDITKLKPHQRAGLGIAYVPQGREIFARLTVEENLLMGMATKSGRKASTIKGE 120 G V EG+ I+ L ++ A G+ VP+ R IF LTVEENL M +S E Sbjct: 57 GRVLFEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWGLE----E 112 Query: 121 VYELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRV 180 +Y +FP LKE GG LSGG+QQ LAIARAL+ P++++LDEP EG+ P I+ +I Sbjct: 113 IYAIFPRLKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQ 172 Query: 181 ISLLRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVASGVQAE-MDNENVK 232 I ++ G + I+L EQ + +LAD ++ +G +V G AE + +E VK Sbjct: 173 IRQIKATG-MSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVK 224 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 171 bits (434), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 95/235 (40%), Positives = 138/235 (58%), Gaps = 8/235 (3%) Query: 1 MLQVNQLNQYYGAAHTLRGVSINVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAXDPVAA 60 +L V L YG + L GV + V++G+ +S+LGRNG G++TLLK LMG+LP + Sbjct: 7 LLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLP------SR 60 Query: 61 GNVTLEGRDITKLKPHQRAGLGIAYVPQGREIFARLTVEENLLMGMATKSGRKASTIKGE 120 G+ EGRDI+ L H A LG+ YVP+ RE+F L+V +NLL+G + + Sbjct: 61 GDCRFEGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRGWCEDD 120 Query: 121 VYELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRV 180 ++ LFP L + LSGG+QQ LA+ RALL P L+++DEPTEG+ P +++ + R Sbjct: 121 IHALFPALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARA 180 Query: 181 ISLLRQRGDIGILLCEQYFDFARELADTFVVMSRGEVVASGVQAEMD-NENVKKH 234 + LR RG + +LL EQ A EL+ VM RGE+V G + E V++ Sbjct: 181 LQELRTRG-VAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSAQETVQRE 234 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 646,684 Number of extensions: 24915 Number of successful extensions: 441 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 249 Number of HSP's successfully gapped: 136 Length of query: 237 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 155 Effective length of database: 1,231,600 Effective search space: 190898000 Effective search space used: 190898000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)