BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0009.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314000|ref|YP_003778092.1| urease accessory UreD protein [...   388   e-109

>gi|300314000|ref|YP_003778092.1| urease accessory UreD protein
           [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score =  388 bits (996), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/276 (68%), Positives = 219/276 (79%), Gaps = 2/276 (0%)

Query: 26  RH--QQARLTLGFADDAGTTRMIERSHFGPLRVQKPLYPEHPAVCHAVIVHPPGGILGGD 83
           RH   QARL LGFADD GTTR++ R HFGPLRVQKPLYPE P++CHA+IVHPPGGI+GGD
Sbjct: 12  RHAPDQARLALGFADDKGTTRLMRRQHFGPLRVQKPLYPEDPSICHAIIVHPPGGIVGGD 71

Query: 84  VLNITAHVGDKAHALLTTPGAGKWYRANGFVSQQQVALTATAGAAMEWLPQETIFFNDAD 143
            L+ITA  G++AHALLTTPGAGKWYRANG  S+Q V L A AGA +EWLPQETIFF+ A+
Sbjct: 72  QLSITAEAGERAHALLTTPGAGKWYRANGQSSRQAVRLDAAAGATLEWLPQETIFFDGAE 131

Query: 144 VRMEHQVELAADATYIGGEILCFGRTASGESFTDGRVSQRTSIRRDGKLVWFEQGALRAG 203
           VRMEH+V LAA+A Y+G EILCFGRTASGE+F  G +SQRTSIRR GKLVWFEQG L+A 
Sbjct: 132 VRMEHEVTLAANAAYLGAEILCFGRTASGETFNTGAISQRTSIRRGGKLVWFEQGRLQAE 191

Query: 204 TSSMTSPLALAGYSVSATLIAVGLPLNAAFLGELREQTSALAHDGRSGATQMKQVLVLRY 263
             +M  PLAL G ++  TLIAVG  ++AA LG LRE   AL  +GRSGAT MKQVL+ RY
Sbjct: 192 AGAMQGPLALDGQTICGTLIAVGDGMDAALLGHLRETIGALQLEGRSGATLMKQVLIARY 251

Query: 264 LGNSSQVARQWLTHAWQRIRPELMQREAIVPRIWNT 299
           +G SS VARQWL  AW  +RP +  +EA +PRIWNT
Sbjct: 252 MGQSSLVARQWLHAAWHVLRPAVTGKEAAIPRIWNT 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,054,000
Number of extensions: 46527
Number of successful extensions: 175
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)