BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0003.p
         (226 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314005|ref|YP_003778097.1| urease accessory UreF protein [...   357   e-100

>gi|300314005|ref|YP_003778097.1| urease accessory UreF protein
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score =  357 bits (917), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/226 (77%), Positives = 195/226 (86%)

Query: 1   MQAQALLHLLQLTSPSLPIGAYSYSQGLEAAIENGTVKNEAGARAWIVDSLHEVVARFEA 60
           MQA ALLHLLQL+SPSLPIGAYSYSQGLEAAIENG V +EA AR WI  +LHEVVARFEA
Sbjct: 1   MQASALLHLLQLSSPSLPIGAYSYSQGLEAAIENGRVSSEATARNWIGHALHEVVARFEA 60

Query: 61  PILWRLLQAFDARDTDAVALWNERFIAARDTAEFRAETIQMGYSLSKLAVDLKIGDQPLL 120
           PI  RL+ AF+ARD + V+LW ERFIAARDT+EFRAETIQMGYSL KL  DLK+GD  LL
Sbjct: 61  PIFARLVAAFEARDAEKVSLWTERFIAARDTSEFRAETIQMGYSLGKLVTDLKLGDATLL 120

Query: 121 DLLQAQGEVPLPTALAYAAVALNVPHDAALLGMLFAWAENQVLVCVKSVPLGQVAGQRLL 180
            +LQ Q E+PLPT+LA+A VAL VP +AA+LGMLFAWAENQVL CVK+VPLGQVAGQR+L
Sbjct: 121 AILQGQPELPLPTSLAFATVALQVPREAAVLGMLFAWAENQVLACVKTVPLGQVAGQRIL 180

Query: 181 LSLQPELEAAAKTAQELADDELSNWSPGLSLLSMQHEVQYSRLYRS 226
           LSLQPELE AA TA  L DDEL NW+PGLSLLSMQHEVQYSR+YRS
Sbjct: 181 LSLQPELEKAAATALTLEDDELCNWAPGLSLLSMQHEVQYSRIYRS 226


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 693,728
Number of extensions: 28304
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,231,600
Effective search space: 177350400
Effective search space used: 177350400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)