BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0034.p
         (310 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310831|ref|YP_003774923.1| 2-ketogluconate kinase [Herbasp...   364   e-102
gi|300311742|ref|YP_003775834.1| transferase kinase [Herbaspiril...    90   2e-19
gi|300311076|ref|YP_003775168.1| sugar kinase,ribokinase family ...    66   4e-12

>gi|300310831|ref|YP_003774923.1| 2-ketogluconate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score =  364 bits (935), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/246 (76%), Positives = 201/246 (81%), Gaps = 1/246 (0%)

Query: 1   MQPQLDVVTYGEALALFVADEVGDFADVEKYTRRLAGAETNVAIGLARLGLKVGWVSRVG 60
           M  QLDVVT+GEALAL VADEVG F +VEKYTRRLAGAETNVAIGLARLGLKVGW SRVG
Sbjct: 1   MTMQLDVVTWGEALALLVADEVGPFEEVEKYTRRLAGAETNVAIGLARLGLKVGWASRVG 60

Query: 61  NDSFGRFICKRVAQEGVDVSQVAIDKEFRTAIQLKAKAVDGADPAIEYYRKGSAASHLSQ 120
           ND+FGRFI +RVAQEGV+VS+V  D EFRTAIQLKAKAV GADPAIEYYRKGSAASHLS 
Sbjct: 61  NDAFGRFIRQRVAQEGVEVSRVITDMEFRTAIQLKAKAVGGADPAIEYYRKGSAASHLSV 120

Query: 121 VDFDEAYFGGARHLHATGIAAALSPSTMAFAHHALDFMRARGKTISFDPNLRPMLWPSQE 180
            DFD  YFG ARHLHATGIA ALS +TMAFAH A+DFMR +GKTISFDPNLRPMLWPSQE
Sbjct: 121 DDFDAGYFGAARHLHATGIAPALSATTMAFAHQAMDFMRGQGKTISFDPNLRPMLWPSQE 180

Query: 181 VMAQKLNELAFKADWVLPGLSEGKILTGRSEPRDIARARRXR-RRLFPQCRRRRHRGGRR 239
           VMAQ+LN LAFKADWVLPGLSEGKILTG  + R+IA     R  +L            R 
Sbjct: 181 VMAQQLNALAFKADWVLPGLSEGKILTGHDDAREIAGFYLERGVKLVVIKLGAEGAYWRN 240

Query: 240 GQGSGR 245
           GQG GR
Sbjct: 241 GQGEGR 246


>gi|300311742|ref|YP_003775834.1| transferase kinase [Herbaspirillum
           seropedicae SmR1]
          Length = 657

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 3/173 (1%)

Query: 5   LDVVTYGEALALFVADEVG-DFADVEKYTRRLAGAETNVAIGLARLGLKVGWVSRVGNDS 63
           LD++  G       A +VG   +DV  + + L G+  N+A G ARLGLK   ++R+G+++
Sbjct: 21  LDLICIGRLAVDLYAQQVGAPLSDVSSFAKYLGGSSANIAFGCARLGLKSAMLARIGDEA 80

Query: 64  FGRFICKRVAQEGVDVSQVAIDKEFRTAIQLKAKAVDGADPAIEYYRKGSAASHLSQVDF 123
            G+F+   +A EG DVS V +D +  TA+ +       + P I +YR   A   L+  D 
Sbjct: 81  NGQFLKAELAAEGCDVSHVTVDPQRLTALVMLGLKDKDSFPLI-FYRDNCADMALAPEDI 139

Query: 124 DEAYFGGARHLHATGIAAALSPSTMAFAHHALDFMRARGKTISFDPNLRPMLW 176
           DEA+   ++ L  TG   + +P     +  AL + R        D + RP+LW
Sbjct: 140 DEAFIASSKALLITGTHFS-TPQVHRSSSLALQYARRHNVRTVLDIDYRPVLW 191


>gi|300311076|ref|YP_003775168.1| sugar kinase,ribokinase family
           protein [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 55  WVSRVGNDSFGRFICKRVAQEGVDVSQVAIDKEFRTAIQLKAKAVDGADPAIEYYRKGSA 114
           ++S VG+D FG+ +     +E VDV  VAI     T I       D A     Y R GSA
Sbjct: 49  YLSAVGDDHFGQDLLALWQREEVDVRHVAIAPGGSTGIYFVTH--DAAGHHFHYRRAGSA 106

Query: 115 ASHLSQVDFDEAYFGGARHLHATGIAAALSPSTMAFAHHALDFMRARGKTISFDPNLRPM 174
           AS              A  LH +GI+ A+S S       A+   RA G T S D NLR  
Sbjct: 107 ASAYQAKALPLEAIAAAGALHLSGISLAISESACEAGLAAMAHARASGVTTSLDTNLRLR 166

Query: 175 LWPSQEVMAQKLNELAFK-ADWVLPGLSEGKILTGRSEPRD 214
           LWP +   A+   E AF+  D  LP   +  +LTG  E RD
Sbjct: 167 LWPLERARARM--EEAFRLCDICLPSWEDVSLLTGL-EDRD 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 870,078
Number of extensions: 33249
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 3
Length of query: 310
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,217,395
Effective search space: 273913875
Effective search space used: 273913875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)