BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0033.p
         (248 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310830|ref|YP_003774922.1| sugar phosphate isomerase/epime...   316   1e-87

>gi|300310830|ref|YP_003774922.1| sugar phosphate
           isomerase/epimerase [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score =  316 bits (809), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 151/245 (61%), Positives = 188/245 (76%)

Query: 3   TPVLVAASAYGADFVRQVGHAHLIPIVAAAGAAGLEIRRELFVELPDFDELHGLLMKHKL 62
           +PVLVAASAYGAD VR+VGHA L+P+VAAAGAAGLEIRRELF    D   L  LL +HKL
Sbjct: 2   SPVLVAASAYGADLVRRVGHADLVPMVAAAGAAGLEIRRELFDGPQDLPALRELLAQHKL 61

Query: 63  FSVYSAPIELFRKDGSLARDELDQVMGEAQQLQSRFLKVSLGHFSPASNMLDWSRFVAQA 122
           FSVYSAP ELF  +G   R+++   M EA++L +RFLKVSLGHFS AS++    RF++ +
Sbjct: 62  FSVYSAPFELFGAEGRFDREQIALAMSEAEELGARFLKVSLGHFSAASDLQSLLRFLSHS 121

Query: 123 PVPLLLENDQTEHGGKLESIANFLAVCSGTGVPVGMTFDMGNWRWSGVDAEVAARTLAAH 182
           P+ +LLENDQT  GG+LE I +FLA+C+G G   GMTFDMGNW W GVD E AAR+LA H
Sbjct: 122 PIEVLLENDQTPQGGRLEPIVSFLALCTGNGYAFGMTFDMGNWHWQGVDPETAARSLAPH 181

Query: 183 VQYVHCKGVWNDKGKLKAIPLDEDDAVWRRLFSHFPRGVQRAIEFPIIGKDLEAATRNYV 242
           V+YVHCKGV + KGKL+A+PL   D+ W+ + +HFP G+ RAIEFP++G DLE  TR +V
Sbjct: 182 VRYVHCKGVQDHKGKLRAVPLQAQDSHWQEMLAHFPTGILRAIEFPLVGSDLEETTRRHV 241

Query: 243 AMLAS 247
           AMLA+
Sbjct: 242 AMLAA 246


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 842,105
Number of extensions: 37150
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,226,865
Effective search space: 202432725
Effective search space used: 202432725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)