BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0032.p (244 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 478 e-136 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 333 1e-92 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 312 1e-86 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 309 1e-85 gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 296 8e-82 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 478 bits (1229), Expect = e-136, Method: Compositional matrix adjust. Identities = 230/244 (94%), Positives = 236/244 (96%) Query: 1 MPIVEIENITKSFGSNQVLNGISLSVERGQVIAVIGRSGSGKSTMLRCINGLETIDGGSI 60 MPIVEI NITK FGSNQVLNGISLSVERGQV+A+IGRSGSGKSTMLRCINGLETIDGGSI Sbjct: 1 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSI 60 Query: 61 NVAGHKLTAKHEHLIELRKDVGMVFQHYNLFPHLTVEENVMLSPRIVKKVATEKARETAI 120 VAGHKLT KHEHLIELRKDVGMVFQHYNLFPHLTVEEN+MLSPRIVKK ATE ARETAI Sbjct: 61 TVAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAI 120 Query: 121 KVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTQEVLKV 180 KVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELT EVLKV Sbjct: 121 KVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKV 180 Query: 181 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSKEFFSDPQTPEARQFVGA 240 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPS+EFF+DPQTPEARQF+GA Sbjct: 181 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIGA 240 Query: 241 GNIK 244 G IK Sbjct: 241 GAIK 244 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 333 bits (853), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 158/239 (66%), Positives = 200/239 (83%), Gaps = 1/239 (0%) Query: 3 IVEIENITKSFGSNQVLNGISLSVERGQVIAVIGRSGSGKSTMLRCINGLETIDGGSINV 62 IV+I+++ KSFGSN+VLNG+SL V++GQ++A+IG+SGSGKST+LRC+NGLE +D G I V Sbjct: 4 IVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQV 63 Query: 63 AGHKLTAKHE-HLIELRKDVGMVFQHYNLFPHLTVEENVMLSPRIVKKVATEKARETAIK 121 GH + + +L ELRK VG+VFQ YNLFPHLTVE N+ L+ +KK++TE+A+ A K Sbjct: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTIAHK 123 Query: 122 VLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTQEVLKVM 181 VL+ VGL++K+DAYPEQLSGGQ QRVAIARSLAM P++MLFDEVTSALDPELT EVLKVM Sbjct: 124 VLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 Query: 182 EELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSKEFFSDPQTPEARQFVGA 240 E+LARGGMTM+LVTHEM FAR++AD+ VFMHQG+VWE P E FS P+T E ++FV + Sbjct: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFVSS 242 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 312 bits (800), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 151/239 (63%), Positives = 187/239 (78%) Query: 1 MPIVEIENITKSFGSNQVLNGISLSVERGQVIAVIGRSGSGKSTMLRCINGLETIDGGSI 60 MP++ I+N+ K FG N+VL GISL VE G+VIA+IG+SGSGKST+LRCINGLE+ID G+I Sbjct: 1 MPLIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNI 60 Query: 61 NVAGHKLTAKHEHLIELRKDVGMVFQHYNLFPHLTVEENVMLSPRIVKKVATEKARETAI 120 +VAG KL A L LR VGM+FQ +NLFPHL+V NVM++P IVK V+ +A +TA Sbjct: 61 SVAGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAK 120 Query: 121 KVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTQEVLKV 180 L++VGL HK DAYP+QLSGGQQQRVAIAR+L+M PQ +L DE+TSALDPEL EVL V Sbjct: 121 ANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTV 180 Query: 181 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSKEFFSDPQTPEARQFVG 239 M LA+ GMT+L+VTHEM FAR V + VFMHQGKV E P +E F +P+TPE +QF+G Sbjct: 181 MRGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 309 bits (791), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 153/239 (64%), Positives = 183/239 (76%), Gaps = 1/239 (0%) Query: 3 IVEIENITKSFGSNQVLNGISLSVERGQVIAVIGRSGSGKSTMLRCINGLETIDGGSINV 62 +VE++ + K FGSN VL G+S V RG+V+A+IG+SGSGKST LRCIN LE ID G I+V Sbjct: 4 VVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISV 63 Query: 63 AGHKLTAKHEHLIELRKDVGMVFQHYNLFPHLTVEENVMLSPRIVKKVATEKARETAIKV 122 GH L A L LR+DVG+VFQ YNLFPHLTV +N+ L P VK++ ++A+ A +V Sbjct: 64 CGHALHAAGLDLRGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKRMPADQAQTLAQQV 123 Query: 123 LKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTQEVLKVME 182 L +VGL K AYPEQLSGGQQQRVAIARSLA++PQ+MLFDEVTSALDPELT EVLKVME Sbjct: 124 LARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVTSALDPELTGEVLKVME 183 Query: 183 ELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSKEFFSDPQTPEARQFVGAG 241 ++A GMTM+LVTHEM FARRVAD +FMHQG+VWE + E P TPE R FVG G Sbjct: 184 QMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWE-QGGPEILDAPVTPELRSFVGTG 241 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 296 bits (759), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 153/238 (64%), Positives = 183/238 (76%), Gaps = 1/238 (0%) Query: 3 IVEIENITKSFGSNQVLNGISLSVERGQVIAVIGRSGSGKSTMLRCINGLETIDGGSINV 62 IV+++ + KSFG NQVL G+S V RG++IA+IG SGSGKST LRCI+ LETID GSI V Sbjct: 26 IVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIEV 85 Query: 63 AGHKLTAKHEHLIELRKDVGMVFQHYNLFPHLTVEENVMLSPRIVKKVATEKARETAIKV 122 AG ++ L +LR++VG+VFQ YNLFPHL V ENVML+ R VK+ +AR A+ Sbjct: 86 AGIRVDDPQVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHVKQQDKAEARRVALAA 145 Query: 123 LKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTQEVLKVME 182 L QVGLD K +AYPEQLSGGQQQRVAIARSLAM P+VMLFDEVTSALDP+LT EVL+VME Sbjct: 146 LAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVME 205 Query: 183 ELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSKEFFSDPQTPEARQFVGA 240 +LA GMTMLLVTHEM FA+RVAD ++MHQG+VWE P E P TPE + F+ A Sbjct: 206 DLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVGPG-EMLDHPYTPELQAFLAA 262 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 721,849 Number of extensions: 27516 Number of successful extensions: 543 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 293 Number of HSP's successfully gapped: 145 Length of query: 244 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 161 Effective length of database: 1,226,865 Effective search space: 197525265 Effective search space used: 197525265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)