BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0028.p (188 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310826|ref|YP_003774918.1| amino-acid ABC transporter peri... 319 9e-89 gi|300313169|ref|YP_003777261.1| amino acid transport periplasmi... 162 2e-41 gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/sign... 111 3e-26 gi|300313886|ref|YP_003777978.1| amino acid ABC transporter peri... 108 3e-25 gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/sign... 107 7e-25 >gi|300310826|ref|YP_003774918.1| amino-acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 319 bits (818), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 168/188 (89%), Positives = 178/188 (94%), Gaps = 1/188 (0%) Query: 1 VEIVPLVPPARIPALESGKVDFLAATLAPTPERAKSVMFTIPYSGFELSIVGPVASKFKN 60 VEIVPLVPPARIPALESGKVD LAATLAPTPERAKSV+FTIPYSGFELSIV PV S +K Sbjct: 81 VEIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVAPVGSNYKK 140 Query: 61 LNDLVKKKVGVSRGSTNDTALTRLAPAGTVLVRFEDDSTVTQALLSGQVDAISIPNTMAT 120 L+DLVKKKVGVSRGSTNDTALTRLAP GTVLVRFEDDSTVTQALLS QVDAISIPNTMA Sbjct: 141 LDDLVKKKVGVSRGSTNDTALTRLAPPGTVLVRFEDDSTVTQALLSNQVDAISIPNTMAN 200 Query: 121 EIVKTRGAGKIDIKFPYSVQPNSMTVRKGAFDLQQWLNNFIYYVKLNGELDAISRKWSGS 180 EIVK+RG GKI++KFPYSVQPNSMTVRKG+++LQQWLNNFIYYVKLNGELDAISRKW+G Sbjct: 201 EIVKSRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGELDAISRKWAG- 259 Query: 181 PLPNLPVF 188 PLPNLPVF Sbjct: 260 PLPNLPVF 267 >gi|300313169|ref|YP_003777261.1| amino acid transport periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 162 bits (409), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 82/188 (43%), Positives = 119/188 (63%) Query: 1 VEIVPLVPPARIPALESGKVDFLAATLAPTPERAKSVMFTIPYSGFELSIVGPVASKFKN 60 +EIV + P RIP L +GK D + ++ + TPER K V FT PY + + P K+ Sbjct: 78 LEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKGENIKS 137 Query: 61 LNDLVKKKVGVSRGSTNDTALTRLAPAGTVLVRFEDDSTVTQALLSGQVDAISIPNTMAT 120 LNDLV K+V V RG+ D+ LT +AP GT +VRF+DD+TVT A++SGQVDA+ PN++A+ Sbjct: 138 LNDLVGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAAIISGQVDALCTPNSLAS 197 Query: 121 EIVKTRGAGKIDIKFPYSVQPNSMTVRKGAFDLQQWLNNFIYYVKLNGELDAISRKWSGS 180 I K + ++ KF P ++ +RKG L++WLN +I NG+L I ++W GS Sbjct: 198 AIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWISANLKNGKLPGIYQQWVGS 257 Query: 181 PLPNLPVF 188 P+P+L F Sbjct: 258 PMPDLAQF 265 >gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 111 bits (278), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 97/183 (53%) Query: 1 VEIVPLVPPARIPALESGKVDFLAATLAPTPERAKSVMFTIPYSGFELSIVGPVASKFKN 60 VE++P+ RIP L + KVD + +++ ER K + F+ Y+ F + GP K+ Sbjct: 75 VELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPFFNGVFGPADLSVKS 134 Query: 61 LNDLVKKKVGVSRGSTNDTALTRLAPAGTVLVRFEDDSTVTQALLSGQVDAISIPNTMAT 120 DL K + V+RGS D LT++ PA + R+ED+++ + LSGQV ++ N +A Sbjct: 135 AADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLSGQVQLVATGNVVAA 194 Query: 121 EIVKTRGAGKIDIKFPYSVQPNSMTVRKGAFDLQQWLNNFIYYVKLNGELDAISRKWSGS 180 I+ K + KF P + + KG LQ ++ + K +G L AIS+KW G Sbjct: 195 AIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKKDGSLSAISQKWLGM 254 Query: 181 PLP 183 PLP Sbjct: 255 PLP 257 >gi|300313886|ref|YP_003777978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 108 bits (270), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 105/183 (57%), Gaps = 1/183 (0%) Query: 1 VEIVPLVPPARIPALESGKVDFLAATLAPTPERAKSVMFTIPYSGFELSIVGPVASKFKN 60 ++++P+ AR+P L++ + D + +L+ TPER K + F+ PY+ L I P + K+ Sbjct: 79 LDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTPYAVISLIIGAPKSMVIKD 138 Query: 61 LNDLVKKKVGVSRGSTNDTALTRLAPAGTVLVRFEDDSTVTQALLSGQVDAISIPNTMAT 120 DL K++GV+R + NDT T+ A G ++R+EDD+T+ ++++GQVD S + Sbjct: 139 YADLNGKRIGVTRATPNDTLTTQNAK-GAEIMRYEDDATLITSMVTGQVDVFSSTPSNLQ 197 Query: 121 EIVKTRGAGKIDIKFPYSVQPNSMTVRKGAFDLQQWLNNFIYYVKLNGELDAISRKWSGS 180 E+ K +++KF + + K L++W++ ++ NG+L+AI +K+ G Sbjct: 198 EMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNMKNGKLNAIYKKYHGR 257 Query: 181 PLP 183 LP Sbjct: 258 DLP 260 >gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/signal transduction system periplasmic binding protein [Herbaspirillum seropedicae SmR1] Length = 269 Score = 107 bits (266), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 108/185 (58%), Gaps = 4/185 (2%) Query: 1 VEIVPLVPPARIPALESGKVDFLAATLAPTPERAKSVMFTIPYSGFELSIVGPVASKFKN 60 +E+VP R+P L++ K D + + + TPERAK + F++PY+ + + P + K + Sbjct: 79 LEVVPTTLTNRVPYLQTNKADIVISAFSITPERAKVIDFSVPYAPILVVVGAPRSMKITS 138 Query: 61 LNDLVKKKVGVSRGSTNDTALTRLAPAGTVLVRFEDDSTVTQALLSGQVDAISIPNTMAT 120 DL KK+ +RG+TND LT++AP+ + RF+DD+T A++SGQ D I + M Sbjct: 139 PADLAGKKIIATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSGQAD-IWATSPMLL 197 Query: 121 EIVKTRGAGKIDIKFPYSVQPNSMTV--RKGAFDLQQWLNNFIYYVKLNGELDAISRKWS 178 ++V + + DI+ +++ N + V RKG L++ ++ +I NGEL+ I +K+ Sbjct: 198 KVVNQKNPSR-DIESKLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLSNGELNTIYKKYH 256 Query: 179 GSPLP 183 + LP Sbjct: 257 EAELP 261 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 587,027 Number of extensions: 22048 Number of successful extensions: 98 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 9 Length of query: 188 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 108 Effective length of database: 1,241,070 Effective search space: 134035560 Effective search space used: 134035560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)