BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0026.p (353 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310825|ref|YP_003774917.1| LacI family transcription regul... 577 e-166 gi|300311611|ref|YP_003775703.1| transcription regulator DNA-bin... 126 3e-30 gi|300310423|ref|YP_003774515.1| GntR family transcription regul... 105 7e-24 gi|300309618|ref|YP_003773710.1| LacI family transcription regul... 99 4e-22 gi|300309932|ref|YP_003774024.1| transcription regulator protein... 87 2e-18 >gi|300310825|ref|YP_003774917.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 382 Score = 577 bits (1486), Expect = e-166, Method: Compositional matrix adjust. Identities = 283/338 (83%), Positives = 304/338 (89%), Gaps = 2/338 (0%) Query: 8 GAGKVTIAQVAREAGVSKTSISRYLGGELDALSERLREQIRSTIARLGYQPSQMARGLKG 67 G +VTIAQVAREAGVSKTS+SRYLGGE DALS RLREQI TIARLGYQPSQMARGLKG Sbjct: 24 GTDRVTIAQVAREAGVSKTSVSRYLGGEFDALSVRLREQIGKTIARLGYQPSQMARGLKG 83 Query: 68 GRTKLIGMLVADILNPYSVAVLHGAEAACQEHGYTLMLCNTGNDEKREKQSLAALHSYSV 127 GRT+LIGMLVADILNPYSVAVLHGAEAACQ+HGYTLMLCNTGNDE REKQSLAALHSYSV Sbjct: 84 GRTRLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLAALHSYSV 143 Query: 128 EGLLFNTQGRNVTPLKELGQAAFPVVLLDRRVEGCDFDLVGLDNVGAARMATEHLLAGGY 187 EGLLFNTQGRNVTPL ELGQAAFPVVLLDR VEGCDFDLVGLDNV AA++AT HLLA GY Sbjct: 144 EGLLFNTQGRNVTPLHELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATRHLLAQGY 203 Query: 188 SDIGLVVQPLHGVSSRQGRQAGFLQAMSTRPDCHGETLEVHIDQPGHVATTLDDFLKRRR 247 +DI LVVQ L+GVSSRQGRQAGFLQAMS R DCHG+TLEV ++QPGHVAT L +F RR Sbjct: 204 TDIALVVQSLYGVSSRQGRQAGFLQAMSERRDCHGQTLEVDVEQPGHVATVLREFFLRR- 262 Query: 248 SRNSAGKVAILAGNGMVSLQIALALQSMKLRFPEDIGLLCFDELSWSPLVGSGISTIEQP 307 S G+VA+LAGNGMVSLQIALALQSMKL FP+D+GLLCFDEL+WSPLVGSGISTIEQP Sbjct: 263 -ARSGGRVALLAGNGMVSLQIALALQSMKLSFPDDVGLLCFDELAWSPLVGSGISTIEQP 321 Query: 308 TYDIGFAAIERLLARINGESAPRREILLDGRLIPRGSS 345 TY+IGF AIERLL RI GE + R E+LLDGRLI RGS+ Sbjct: 322 TYEIGFTAIERLLVRIQGERSVRMEMLLDGRLISRGST 359 >gi|300311611|ref|YP_003775703.1| transcription regulator DNA-binding repressor protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 126 bits (316), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 96/333 (28%), Positives = 156/333 (46%), Gaps = 5/333 (1%) Query: 13 TIAQVAREAGVSKTSISRYLGGELDALSERLREQIRSTIARLGYQPSQMARGLKGGRTKL 72 TI VAR AGVS T++S L + +S RE++ + + L Y PS +AR L+ T Sbjct: 3 TIKDVARLAGVSYTTVSHVLN-QTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTGS 61 Query: 73 IGMLVADILNPYSVAVLHGAEAACQEHGYTLMLCNTGNDEKREKQSLAALHSYSVEGLLF 132 IG+++ + NPY + G E C GY+++LCN+ +D +++ L L + +GL+ Sbjct: 62 IGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLII 121 Query: 133 NTQGRNVTPLKELGQAAFPVVLLDRRVEGCDFDLVGLDNVGAARMATEHLLAGGYSDIGL 192 T N L G+ P VLLDR + D DLV DN +A HLL + Sbjct: 122 ATL--NQADLNPAGKLDIPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRVAC 179 Query: 193 VVQPLHGVSSRQGRQAGFLQAMSTRPDCHGETLEVHIDQPGHVATTLDDFLKRRRSRNSA 252 + P G+ R GF Q + ++ +H D G L + R + Sbjct: 180 IAGP-DGLELSDERVRGFRQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQGRPADQR 238 Query: 253 GKVAILAGNGMVSLQIALALQSMKLRFPEDIGLLCFDELSWSPLVGSGISTIEQPTYDIG 312 AI N M+++ + A +++ P ++ ++ FD++ + V ++T+ Q T +G Sbjct: 239 PD-AIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLG 297 Query: 313 FAAIERLLARINGESAPRREILLDGRLIPRGSS 345 + LL RI S P R + +L RGS+ Sbjct: 298 NLTAQFLLERIADPSLPARRETVAPQLQLRGST 330 >gi|300310423|ref|YP_003774515.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 352 Score = 105 bits (261), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 87/326 (26%), Positives = 147/326 (45%), Gaps = 17/326 (5%) Query: 6 SAGAGKVTIAQVAREAGVSKTSISRYLGGELDALSERLREQIRSTIARLGYQPSQMARGL 65 S G+VTI VA EAGVS ++SR L + E+ R++I I +LGY P+Q A L Sbjct: 20 SRATGRVTIIDVAAEAGVSPMTVSRALKTPA-LVQEQSRQRILEAIDKLGYVPNQAAATL 78 Query: 66 KGGRTKLIGMLVADILNPYSVAVLHGAEAACQEHGYTLMLCNTGNDEKREKQSLAALHSY 125 R++++ +LV + N + L G GY ++ TG D +E++ +A ++ Sbjct: 79 ASARSQVVAVLVPSLTNAVFIETLSGIRDYLASVGYQFLIGETGYDRHKEEELIATYLAH 138 Query: 126 SVEGLLF-NTQGRNVTPLKELGQAAFPVVLLDRRVEGCDFDLVGLDNVGAARMATEHLLA 184 + G L ++Q ++ + +A V + D D+ VG A HL Sbjct: 139 APAGFLLSSSQQHDILQSRPASRAIPAVRMFDLGRSQQDYS-VGFSQTRAGHAVARHLAE 197 Query: 185 GGYSDIGLVVQPLHG--VSSRQGRQAGFLQAMSTRPDCHGETLEVHIDQPGHVATTLD-- 240 GY + L + R+G + G +A +EV + QP TT+D Sbjct: 198 RGYRRPAFLAAQLDPRMMKRREGFRKGLQEA------GLAADIEVLLPQP----TTVDMG 247 Query: 241 DFLKRRRSRNSAGKVAILAGNGMVSLQIALALQSMKLRFPEDIGLLCFDELSWSPLVGSG 300 L RR ++ ++ N ++L Q + P + + F++LSW+ Sbjct: 248 AQLLRRVLQDHPDCDSVFCCNDDLALGALFECQRQGISVPRQMAIAGFNDLSWAACATPS 307 Query: 301 ISTIEQPTYDIGFAAIERLLARINGE 326 I+T+ P YDIG+ + E L+ ++ GE Sbjct: 308 ITTVVTPRYDIGYQSAEMLVRQLKGE 333 >gi|300309618|ref|YP_003773710.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 89/340 (26%), Positives = 155/340 (45%), Gaps = 17/340 (5%) Query: 13 TIAQVAREAGVSKTSISRYLGGELDALSERLREQIRSTIARLGYQPSQMARGLKGGRTKL 72 T+++VAR AGV+ ++S L + + E+ R+++ +A+LGY+P AR L GR Sbjct: 3 TLSEVARLAGVTSATVSNVLR-QRGKVGEQTRQRVLDAVAQLGYRPHLTARALAEGRAPT 61 Query: 73 IGMLVADILNPYSVAVLHGAEAACQEHGYTLMLCNTGNDEKREKQSLAALHSYSVEGLLF 132 + ++V+ I NP+ AE A ++HG L++CNT +D + L + +G+L Sbjct: 62 LALVVSSIANPFYPEFALAAERAARDHGRFLIVCNTNDDPDIGRAYLDQIAGTLSDGVLI 121 Query: 133 NTQGRNVTPLKELGQAAFPVVL--LDRRVEGCDFDLVGLDNVGAARMATEHLLAGGYSDI 190 + L++ Q PVVL ++ + + +D A +A HLL G+ Sbjct: 122 MNANLPMDELRKTEQRGAPVVLCMWEKPDAPPELPCIAVDFFEAGAIAARHLLGLGHQCF 181 Query: 191 -GLVVQPLHGVSSRQGRQAGFLQAMSTRPDCHGETLEVHID---QPGHVATTLDDFLKRR 246 LV G+ + + R GF A H +I+ + G+ AT + L Sbjct: 182 AALVGSKKSGIHAERYR--GFASACKEAGHPHPTQRTRYINDTVESGYRATM--ELL--- 234 Query: 247 RSRNSAGKVAILAGNGMVSLQIALALQSMKLRFPEDIGLLCFDELSWSPLVGSGISTIEQ 306 R AI A N + +L A+ M + P D+ + ++ W+ + ++T+ Sbjct: 235 --REHPQVTAIFASNDLPALGAMNAIADMGMNVPRDVSVTGITDIQWARVSRPALTTVAV 292 Query: 307 PTYDIGFAAIERLLARINGES-APRREILLDGRLIPRGSS 345 PT +IE LLA I S +P + +L+ R S+ Sbjct: 293 PTEAAARMSIELLLALIERRSPSPVMHVTAAPQLVERAST 332 >gi|300309932|ref|YP_003774024.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/322 (25%), Positives = 146/322 (45%), Gaps = 22/322 (6%) Query: 13 TIAQVAREAGVSKTSISRYLGGELDALSERLREQIRSTIARLGYQPSQMARGLKGGRTKL 72 +I QVA AGVS ++SR L + ++S E+I +IA LG++P+ R L+ G ++ Sbjct: 4 SIKQVAHLAGVSIATVSRLLN-KPGSVSAETAEKIHRSIAELGFRPNFTGRNLRAGNSRT 62 Query: 73 IGMLVADILNPYSVAVLHGAEAACQEHGYTLMLCNTGNDEKREKQSLAALHSYSVEGLLF 132 +G++V + N L G E A + Y++M T + E ++ L + V+G++ Sbjct: 63 VGVVVPTLSNTVFAQCLQGIELAARALDYSVMFTTTEYLPEEETAAVELLLGHRVDGMIL 122 Query: 133 NTQ--GRNVTPLKELGQAAFPVVLLDRRVEGCDFDL------VGLDNVGAARMATEHLLA 184 N T L L + P VL ++ G D V +DN AA A HL+ Sbjct: 123 TVADASANAT-LDLLERERIPFVLAYNQL-GTDQTAAPARASVSVDNRAAACDAVAHLIG 180 Query: 185 GGYSDIGLVVQPLHGVSSRQGRQAGFLQAMSTRPDCHGETLEVHIDQPGHVATTLDDF-- 242 G+ I ++ + R G+L AM +EV H T D+ Sbjct: 181 LGHRRIQMLSGRFNASDRAMQRYYGYLDAMRAAGLAPMAVIEVE----RHTLTAAADYQQ 236 Query: 243 -LKRRRSRNSAGKVAILAGNGMVSLQIALALQSMKLRFPEDIGLLCFDELSWSPLVGSGI 301 + R R +A + N ++++ L+++ ++ P DI ++ FD + L+ + Sbjct: 237 MMADPRQRPTA----LFCSNDLLAMSAMRDLRALGMKVPNDISVMGFDGIPVGALMEPVL 292 Query: 302 STIEQPTYDIGFAAIERLLARI 323 +++ QP+ IG A+ L+ I Sbjct: 293 ASVVQPSEQIGEVALRVLVEAI 314 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,156,117 Number of extensions: 50698 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 8 Length of query: 353 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 267 Effective length of database: 1,212,660 Effective search space: 323780220 Effective search space used: 323780220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)