BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0021.p
         (161 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310807|ref|YP_003774899.1| NAD-dependent formate dehydroge...   290   5e-80
gi|300311100|ref|YP_003775192.1| NADH dehydrogenase I subunit F ...    76   1e-15

>gi|300310807|ref|YP_003774899.1| NAD-dependent formate
           dehydrogenase beta subunit [Herbaspirillum seropedicae
           SmR1]
          Length = 520

 Score =  290 bits (741), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 149/161 (92%), Gaps = 4/161 (2%)

Query: 1   LRQLLEDFGGGTLSGRPIRAVQVGGPLGAYMPQQQLDTPLDYEAFAAIGAMVGHGGMVVF 60
           LRQLLEDFGGG+ SGRPIRAVQ+GGPLGAY+PQ Q DTPLDYEAFAAIGAM+GHGG+V F
Sbjct: 364 LRQLLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGLVAF 423

Query: 61  DDGVDMAQQARYAMEFCAIESCGKCTPCRIGSTRGVEVIDKIIANEGGKDSRPQQIHLLR 120
           DD VDMA+QARYAM+FCA+ESCGKCTPCRIGSTRGVEVIDKIIAN    D R QQIHLL+
Sbjct: 424 DDSVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIAN----DDRAQQIHLLK 479

Query: 121 DLCDTMLNGSLCAMGGLTPYPVLSALNHFPEDFGSPAEEAA 161
            LCDTM+NGSLCAMGG+TP+PVLSALNHFPEDFG+P+E+AA
Sbjct: 480 SLCDTMVNGSLCAMGGMTPFPVLSALNHFPEDFGAPSEQAA 520


>gi|300311100|ref|YP_003775192.1| NADH dehydrogenase I subunit F
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score = 75.9 bits (185), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 5   LEDFGGGTLSGRPIRAVQVGGPLGAYMP-QQQLDTPLDYEAFAAIGAMVGHGGMVVFDDG 63
           L +  GG   G+ I+AV  GG     +     +DT +DY+A A  G+M+G G ++V D+ 
Sbjct: 271 LLELAGGMRGGKKIKAVIPGGSSAPVIRGDVMMDTTMDYDAIAKAGSMLGSGAVIVMDET 330

Query: 64  VDMAQQARYAMEFCAIESCGKCTPCRIGSTRGVEVIDKIIANEGGKDSRPQQIHLLRDLC 123
             M +       F   ESCG+CTPCR G+     ++++I    G    + + + +L  + 
Sbjct: 331 RCMVKSLLRLSYFYYEESCGQCTPCREGTGWMYRMVERIENGHG----KMEDLDVLNSVA 386

Query: 124 DTMLNGSLCAMGGLTPYPVLSALNHFPEDF 153
           D +   ++CA+G     PV + + +F E+F
Sbjct: 387 DNIQGRTICALGDAAAMPVRAFVKNFREEF 416


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 590,863
Number of extensions: 25787
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 161
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,250,540
Effective search space: 103794820
Effective search space used: 103794820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)