BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0020.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310807|ref|YP_003774899.1| NAD-dependent formate dehydroge...   407   e-115
gi|300311100|ref|YP_003775192.1| NADH dehydrogenase I subunit F ...   130   1e-31

>gi|300310807|ref|YP_003774899.1| NAD-dependent formate
           dehydrogenase beta subunit [Herbaspirillum seropedicae
           SmR1]
          Length = 520

 Score =  407 bits (1046), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/268 (73%), Positives = 226/268 (84%), Gaps = 4/268 (1%)

Query: 2   SIKIYVPRDSAAIALGANDVAAAIRGEAEKRGVEVNIVRNGSRGMFWLEPLVEVETGQGR 61
           ++ +YVPRDS A+ALGAN+VAAAI  EA KRG  + +VRNGSRGMFWLEPLVEV T  GR
Sbjct: 6   TVTVYVPRDSTALALGANEVAAAITAEAHKRGQSIKLVRNGSRGMFWLEPLVEVATAAGR 65

Query: 62  VAYGPVDPTDVAGLFDAGFLEDATDAFEHPLAQGLTEEIPYLKKQERLTFARVGITDPVS 121
           VAYGPV P DVAGLFDAG L+      +H L  GLTEEI +LK QERLTFARVGI DP+S
Sbjct: 66  VAYGPVAPEDVAGLFDAGLLQGG----QHALHLGLTEEIAFLKNQERLTFARVGIIDPLS 121

Query: 122 LDDYLAHEGYAGLKRAVGMSSEAIVQEVLDSGLRGRGGAAFPTGIKWKTVAAAKAAQKYI 181
           L+DYLAHEGY GLK A+  + EAIVQE++ SGLRGRGGAAFPTGIKW+TV  A++AQKY+
Sbjct: 122 LEDYLAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKYV 181

Query: 182 VCNADEGDSGTFSDRMVMEDDPFTLIEGMTIAGLAVGATQGYIYVRSEYPHAIAALNEAI 241
           VCNADEGDSGTFSDRM+MEDDPFTLIEGMTIAG+AVGAT+GYIYVRSEYPH+IA L +AI
Sbjct: 182 VCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQAI 241

Query: 242 ASASQNGYLGDNVLGSGKAFCLEVRMGA 269
           A A   GYLGD++LGSGK+F LEVR GA
Sbjct: 242 AIAHAQGYLGDDILGSGKSFRLEVRKGA 269


>gi|300311100|ref|YP_003775192.1| NADH dehydrogenase I subunit F
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/150 (45%), Positives = 91/150 (60%), Gaps = 2/150 (1%)

Query: 121 SLDDYLAHEGYAGLKRAVG--MSSEAIVQEVLDSGLRGRGGAAFPTGIKWKTVAAAKAAQ 178
            L+DY+   GY  LKR +   ++ E ++ ++  SGLRGRGGA FPTG+KW  +      Q
Sbjct: 23  HLEDYVKRGGYESLKRILNEKITPEQVIADLKASGLRGRGGAGFPTGLKWSFMPRQFPGQ 82

Query: 179 KYIVCNADEGDSGTFSDRMVMEDDPFTLIEGMTIAGLAVGATQGYIYVRSEYPHAIAALN 238
           KY+VCN DEG+ GTF DR ++  +P  LIEGM I G A+G T GY Y+  E   A     
Sbjct: 83  KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYAMGITVGYNYIHGEIFSAYERFE 142

Query: 239 EAIASASQNGYLGDNVLGSGKAFCLEVRMG 268
           EA+  A   G+LGDN+LG+G +F L    G
Sbjct: 143 EALEEARAAGFLGDNILGTGFSFQLHAHHG 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 952,799
Number of extensions: 40005
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)