BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0016.p (313 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310802|ref|YP_003774894.1| LysR family transcription regul... 504 e-144 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 181 9e-47 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 163 2e-41 gi|300311233|ref|YP_003775325.1| LysR family transcription regul... 159 2e-40 gi|300311443|ref|YP_003775535.1| LysR family transcription regul... 159 3e-40 >gi|300310802|ref|YP_003774894.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 504 bits (1298), Expect = e-144, Method: Compositional matrix adjust. Identities = 241/293 (82%), Positives = 263/293 (89%) Query: 9 PLLEDLRLFCVVARKNSFAESAKEMGSSPAYISKRIALLEAALGVRLFHRTTRSVVMTEE 68 PLLEDLRLFCVVAR +SFA SA+E+G+SPAYISKRIALLE ALGVRLFHRTTRSVVMTEE Sbjct: 5 PLLEDLRLFCVVARHSSFAGSAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEE 64 Query: 69 GSNVHEWARRILDDVDQMLETVSSAKQVPRGLLKISTSFALGRKYVSPLLSEFARLHPAL 128 G NVHEWARRILDDV+QM+ETVSSAK+VPRGLLKISTSF LGRK VSPLLS FA HP L Sbjct: 65 GGNVHEWARRILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPEL 124 Query: 129 RIQLELFDRQVDMINEGFDLDIRVGPVHEPHLFAKRIIASQRVLCASPDYLARHGAPQTL 188 +IQLEL DRQ+D++NEG DLDIRVG HEPHLF+KRI+ SQRVLCASP YL +HG P L Sbjct: 125 KIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGLPADL 184 Query: 189 SDLTQHQCLVIRERNQSFGIWRMMGPNGAETVKVAGGLASNHGEIIHQWAIDGHGVILRS 248 + L QHQCLVIRERNQSFGIWRMMGP G ETVKV+G LASNHGEIIHQWA+DGHG+ILRS Sbjct: 185 AALRQHQCLVIRERNQSFGIWRMMGPKGVETVKVSGMLASNHGEIIHQWAVDGHGIILRS 244 Query: 249 IWDVAASLKDGSLVRVLPAYFQEADLCAVYPLQLKNSAKIRECVRFLQKNLNV 301 WDVA SLK G LVRVLP Y+QEADLCAVYPLQLKNSAK+RECVRFLQK+L+V Sbjct: 245 AWDVADSLKRGRLVRVLPQYYQEADLCAVYPLQLKNSAKVRECVRFLQKHLDV 297 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 181 bits (458), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 101/287 (35%), Positives = 155/287 (54%), Gaps = 2/287 (0%) Query: 11 LEDLRLFCVVARKNSFAESAKEMGSSPAYISKRIALLEAALGVRLFHRTTRSVVMTEEGS 70 + + F VA + S + +A+ G +PA I +R+ LE LGV+L RTTR +V+T EG+ Sbjct: 4 FKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTNEGA 63 Query: 71 NVHEWARRILDDVDQMLETVSSAKQVPRGLLKISTSFALGRKYVSPLLSEFARLHPALRI 130 E +RIL D++ VS G L IS GR++V+PLL F H + + Sbjct: 64 AFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRDVTL 123 Query: 131 QLELFDRQVDMINEGFDLDIRVGPVHEPHLFAKRIIASQRVLCASPDYLARHGAPQTLSD 190 L L DR D+I EG D+ IR+ + + +L + ++ + RV+ A+P YL RHG PQ+ + Sbjct: 124 TLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQSPDE 183 Query: 191 LTQHQCLVIRERNQSFGIWRMMGPNGAETVKVAGGLASNHGEIIHQWAIDGHGVILRSIW 250 L +H CL + G W + KV G + N GE++H WA+ G G+ RS+W Sbjct: 184 LMRHNCLAMSSEGSQRG-WTLRQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRSMW 242 Query: 251 DVAASLKDGSLVRVLPAYFQEA-DLCAVYPLQLKNSAKIRECVRFLQ 296 +V A+++ G LV VL + A + AV+ + +IR V FL+ Sbjct: 243 EVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLR 289 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 163 bits (412), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 158/288 (54%), Gaps = 2/288 (0%) Query: 11 LEDLRLFCVVARKNSFAESAKEMGSSPAYISKRIALLEAALGVRLFHRTTRSVVMTEEGS 70 L ++ F VA SF ++A+ +G S A +S+ + LEA LG RL RTTR + +TE G+ Sbjct: 4 LREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGA 63 Query: 71 NVHEWARRILDDVDQMLETVSSAKQVPRGLLKISTSFALGRKYVSPLLSEFARLHPALRI 130 E ++I+ +++ + +SS P GLL+I+ G +++PL F HP + + Sbjct: 64 LYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISL 123 Query: 131 QLELFDRQVDMINEGFDLDIRVGPVHEPHLFAKRIIASQRVLCASPDYLARHGAPQTLSD 190 + L DR VD+I+EG+D+ IR+ + + L +++ ++ +CASP YL HG P + Sbjct: 124 DITLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHE 183 Query: 191 LTQHQCLVIRERNQSFGIWRMMGPNGAETVKVAGGLASNHGEIIHQWAIDGHGVILRSIW 250 L QHQ + NQS W+ GP G +V+V+ L N+G+ Q A+ G G+ + + Sbjct: 184 LAQHQT-ISYSYNQSKDEWQFNGPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQPTF 242 Query: 251 DVAASLKDGSLVRVLPAY-FQEADLCAVYPLQLKNSAKIRECVRFLQK 297 + L+ G LV +L Y E + AVYP + AK+R + FL + Sbjct: 243 MIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTE 290 >gi|300311233|ref|YP_003775325.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 315 Score = 159 bits (403), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/302 (31%), Positives = 160/302 (52%), Gaps = 7/302 (2%) Query: 2 NNQSVAPPLLEDLRLFCVVARKNSFAESAKEMGSSPAYISKRIALLEAALGVRLFHRTTR 61 NQS+A LL ++ +F V SF+E+A+++G++P+ IS+ IA LE ALG +L RTTR Sbjct: 3 TNQSIA--LLNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTR 60 Query: 62 SVVMTEEGSNVHEWARRILDDVDQMLETVSSAKQVPRGLLKISTSFALGRKYVSPLLSEF 121 + ++E G ++H R +L+ +L + P+G +++S A+G V P + +F Sbjct: 61 KLRLSESGQDIHARCRDMLNAAQAVLAVSGAFDAEPQGQVRVSVPKAVGHALVHPHVPDF 120 Query: 122 ARLHPALRIQLELFDRQVDMINEGFDLDIRVGPVHEPHLFAKRIIASQRVLCASPDYLAR 181 HP + + L L DR +D+I++ DL IR+ P L +R++ +LCA+P YLA Sbjct: 121 LAAHPKVDVLLRLEDRYMDLIDDEVDLAIRITDHPPPGLMGRRLMRIDHLLCATPHYLAT 180 Query: 182 HGAPQTLSDLTQHQCLVIRERNQSFGIWRMMGPNGAETVKVAGGLASNHGEIIHQWAIDG 241 HG P L +H C+ + E + + WR + V+V G A+NH + + Sbjct: 181 HGTPAHPQALKEHSCIYLGE-SPADARWRFRRQGKSVNVEVRGRYAANHTGVRLDAVLRH 239 Query: 242 HGVILRSIWDVAASLKDGSLVRVLPAYFQEADLC----AVYPLQLKNSAKIRECVRFLQK 297 G+ + +L++GSLV+VLP + C A+YP ++ V+FL + Sbjct: 240 LGIASLPYFIARPALEEGSLVQVLPQWSFRTHYCGELWALYPATRHLPPRLGAFVQFLAQ 299 Query: 298 NL 299 L Sbjct: 300 RL 301 >gi|300311443|ref|YP_003775535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 159 bits (401), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 152/291 (52%), Gaps = 2/291 (0%) Query: 11 LEDLRLFCVVARKNSFAESAKEMGSSPAYISKRIALLEAALGVRLFHRTTRSVVMTEEGS 70 L D+ LF V R SFA + + + P IS+R+ LEAA+GVRL R+TR + MT G Sbjct: 4 LNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTAAGR 63 Query: 71 NVHEWARRILDDVDQMLETVSSAKQVPRGLLKISTSFALGRKYVSPLLSEFARLHPALRI 130 E L+D++ +++ ++ P G L+++ + + EF L+P +++ Sbjct: 64 EFFERCAPGLEDIEHASASLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMHLYPKVQL 123 Query: 131 QLELFDRQVDMINEGFDLDIRVGPVHEPHLFAKRIIASQRVLCASPDYLARHGAPQTLSD 190 + L D + D+I EG DL R G + + L A++++ S L ASP YL R G PQ+L+D Sbjct: 124 EFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLERQGTPQSLTD 183 Query: 191 LTQHQCLVIRERNQSFGIWRMMGPNGAETVKVAGGLASNHGEIIHQWAIDGHGVILRSIW 250 LT H CL + Q +W++ GP+G E+VKV L N + + A G G+ L Sbjct: 184 LTAHACLATSQAPQH-TVWKLEGPHGPESVKVTPRLCVNTAQGQLRAARAGLGIALLPTM 242 Query: 251 DVAASLKDGSLVRVLPAYFQEA-DLCAVYPLQLKNSAKIRECVRFLQKNLN 300 + L++G+LV +LP Y ++ AVY + + + + + F L Sbjct: 243 LASEDLRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLE 293 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 943,904 Number of extensions: 37294 Number of successful extensions: 240 Number of sequences better than 1.0e-08: 55 Number of HSP's gapped: 200 Number of HSP's successfully gapped: 55 Length of query: 313 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 228 Effective length of database: 1,217,395 Effective search space: 277566060 Effective search space used: 277566060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)