BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0004.p
         (224 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313000|ref|YP_003777092.1| AMP-binding enzyme family prote...   196   9e-52

>gi|300313000|ref|YP_003777092.1| AMP-binding enzyme family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 586

 Score =  196 bits (499), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 103/167 (61%), Positives = 117/167 (70%)

Query: 29  PGARFALYLQDTISFAAALFGAWQAGKTIYLPSDTLAETCKALALEVDGFIGEFDAALQP 88
           PG R AL+  DT+ FAAALF  W AGKT YLPSD L +TC+ L  EVD F+GEF A    
Sbjct: 51  PGQRMALFHHDTLQFAAALFAIWLAGKTAYLPSDALPDTCRQLQGEVDAFLGEFGAHCPA 110

Query: 89  LQPSSAPAVADKAGTPQPLDGDAPALVVYTSGSTGTAQAIPKKLSQLSTEVATLEALFGA 148
           L P+   A  D       L  D   LVVYTSGSTG AQAIPK+L Q++ EVATLEALFGA
Sbjct: 111 LHPAGDAAEGDTPDAWPTLRADFGGLVVYTSGSTGLAQAIPKQLGQMANEVATLEALFGA 170

Query: 149 QAGAADIVSTVSHQHIYGLLFKVLWPLAAGRAIHARSAFFPEDLAAM 195
             G A++++TVSHQHIYGLLFKVLW L AGR +HA SAFFPEDL  M
Sbjct: 171 IVGEAEVIATVSHQHIYGLLFKVLWALCAGRPVHAGSAFFPEDLQRM 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 680,156
Number of extensions: 28886
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,231,600
Effective search space: 174887200
Effective search space used: 174887200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)