BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0003.p
         (363 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313000|ref|YP_003777092.1| AMP-binding enzyme family prote...   395   e-111

>gi|300313000|ref|YP_003777092.1| AMP-binding enzyme family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 586

 Score =  395 bits (1015), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/361 (61%), Positives = 259/361 (71%), Gaps = 15/361 (4%)

Query: 2   RPDVSRLQAIFSSGGPLLPDVAAATQQLLGHRPIEIYGSSETGGIAWRQPQELAGTARDD 61
           +PD  +L+AIFSSGGPL    AA + +LLG RP+EIYGSSETGGIAWRQPQ      R +
Sbjct: 241 QPDARQLRAIFSSGGPLPAQAAADSARLLGQRPLEIYGSSETGGIAWRQPQT-DPLQRQE 299

Query: 62  SWRPMRRVEVRLNSEHDCLEVRSPHLPDDHWLRMADRVEFTSEQNPAQGFYLRGRADRIV 121
            W+ M  VEVRL +E + LEVRSPHLPD  W  MADR      Q P Q F LRGR+DRIV
Sbjct: 300 HWQAMPGVEVRLGAEGE-LEVRSPHLPDSAWFGMADRAALVPGQ-PGQ-FELRGRSDRIV 356

Query: 122 KLEEKRISLDQIERLLLASPLTAEVRVLVHQELPSSSSSSSRRERIAAFVVPTDAGRAVL 181
           KLEEKRISL +IE+LL ASPL  +VRV+VHQ           R+ IAAFVVP+    A+L
Sbjct: 357 KLEEKRISLTRIEQLLNASPLVEDVRVIVHQ-------GRRARQFIAAFVVPSAPAHAML 409

Query: 182 EQQGKLALNTQLRAVLADAIESVALPRLWRYLDALPANTQGKTTVAALTALLEQTPAKAA 241
             QGKLALNT L+AVLA AIES+ALPRLWRYL ALP N QGK T++ALTALLE   + AA
Sbjct: 410 AAQGKLALNTALKAVLAGAIESIALPRLWRYLPALPVNPQGKVTLSALTALLE---SPAA 466

Query: 242 ATVSTSRPRWPEQTVLQRDDRSVVLQLHVPPDLLYFDGHFPEAPILPGVVQVDWALALGR 301
           A V  S P  P+ + L+R    V L L +P DLLYF GHFP +PILPGVVQ DW+LALGR
Sbjct: 467 APV-VSAPTLPQVSELERSSEHVQLALDIPADLLYFRGHFPGSPILPGVVQTDWSLALGR 525

Query: 302 QYFDLPAHFRALQALKFQRVVTPGATLTLELENDTQKNLLAFRLHSAGGQHASGRILFGE 361
           +YFDLP HF  LQALKFQRV+TPG  + L+L+ +  K+ L+FRLHS GGQHASGR L G 
Sbjct: 526 RYFDLPPHFLGLQALKFQRVITPGMRVLLDLQFEAGKSQLSFRLHSEGGQHASGRFLLGA 585

Query: 362 A 362
           A
Sbjct: 586 A 586


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,187,406
Number of extensions: 49976
Number of successful extensions: 184
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,212,660
Effective search space: 335906820
Effective search space used: 335906820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)