BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0002.p
         (251 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313001|ref|YP_003777093.1| glycosyl transferase, group 2 f...   337   5e-94

>gi|300313001|ref|YP_003777093.1| glycosyl transferase, group 2
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 262

 Score =  337 bits (864), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 171/241 (70%), Positives = 192/241 (79%)

Query: 2   KTGVVIPVYNHELAIPAVLAAVLLHGLHCILVDDGSNAACAAVLDRLAAEHPRRVTLLRH 61
           +T VVIPV++HE AI AV+AAV  HGL CILVDDG +  CAAVL +LAA  P+  TLL H
Sbjct: 8   RTVVVIPVFDHEHAIGAVVAAVRSHGLPCILVDDGCSPGCAAVLRQLAAADPQATTLLVH 67

Query: 62  AMNRGKGDAVLTGLHHLAQHGYSHALQIDADGQHDAADITRFIALSARHPQAVINGCPIY 121
             N+GKG AV+TGL H A  GY+HALQIDADGQHD+ADI RF+A S   PQAVING P+Y
Sbjct: 68  PHNQGKGGAVMTGLRHAAAAGYTHALQIDADGQHDSADIPRFLAASQAAPQAVINGRPVY 127

Query: 122 DDSVPKGRLYARYLTHVWVWINTLSFDIRDSMCGFRLYPLAAVTALTSVQKIGCRMDFDT 181
           D+SVPKGRLYARYLTHVWVWINTLS +I DSMCGFRLYPLA    L     IG RMDFDT
Sbjct: 128 DESVPKGRLYARYLTHVWVWINTLSLEIVDSMCGFRLYPLAPTLQLIDRTTIGRRMDFDT 187

Query: 182 EILVRLHWRGVSVINLPTRVRYPSDGVSHFRLWLDNVLISRMHTVLFFGMLWRSPLLLIR 241
           EILVRL+WRG+ V NL TRVRYP+DGVSHF++WLDNVLISRMH  LF GML R+PLLL R
Sbjct: 188 EILVRLYWRGLRVHNLATRVRYPADGVSHFQVWLDNVLISRMHARLFLGMLLRAPLLLGR 247

Query: 242 K 242
            
Sbjct: 248 S 248


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 710,518
Number of extensions: 26881
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,226,865
Effective search space: 206113320
Effective search space used: 206113320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)