BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0145.p (574 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibioti... 790 0.0 gi|300312350|ref|YP_003776442.1| bacteriocin/lantibiotic exporte... 192 4e-50 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 157 2e-39 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 137 2e-33 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 115 1e-26 >gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibiotic ATPase/permease fusion exporter protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/574 (72%), Positives = 491/574 (85%), Gaps = 8/574 (1%) Query: 1 MNQSDQIYVDQPQADLRSLRKDPVYLTLMRAYGGRFVEIVVAGVLINVFGLFMPLYSRLV 60 MN S+Q+++DQPQ L+ LR DP YL+L+RAYG RFVEI+VAG+++NV GL MPLYSRL+ Sbjct: 1 MNASEQVHIDQPQV-LQDLRADPSYLSLLRAYGSRFVEIIVAGIVVNVLGLLMPLYSRLI 59 Query: 61 YDKVIGNHITETLWALTLGMALFIVLELVLRIIRMYYIEQLAGRFDIEFDNRSVRRLLES 120 YDKVIGNHI ETLWALTLGM LF+ LELVLRIIR+YY EQLAGR D EFD S RR+L + Sbjct: 60 YDKVIGNHIPETLWALTLGMLLFVALELVLRIIRVYYTEQLAGRLDSEFDEVSARRMLTA 119 Query: 121 KVTAPVGVVLAKYRDLSSARDLLSSNYMLMLIDLPFLAMYVVAVGLLGGHLVWVILVGGG 180 +V APVGVVLA+YRDLS+ARDL+SSNYML+L+DLPFL +Y+V +GL+GGH+VWV+LVGGG Sbjct: 120 RVQAPVGVVLARYRDLSAARDLMSSNYMLLLVDLPFLLLYLVVLGLIGGHMVWVLLVGGG 179 Query: 181 MLVAAQLLCKIPATDYSNAAMTSGIGKIDKLASLVFGMETLKTSPLQDRLVKAFLSDAAD 240 +LV QLL K+P DY+N+AM +G GK+DKLAS+V+GMETLKTSPLQ RL++AFL+DA+ Sbjct: 180 LLVGLQLLLKVPGNDYANSAMKAGTGKVDKLASIVYGMETLKTSPLQHRLLRAFLADASA 239 Query: 241 NAVSQAKSRFWMNAGYALSTVGYTLISVGTLVIGVYLVEDNALTVGALIATSLLISRATS 300 NAV+QAKSRFWMN YA+S+VGYTLISV TLV+GVYLVEDN LTVGALIA SLLISRA + Sbjct: 240 NAVAQAKSRFWMNTSYAISSVGYTLISVATLVVGVYLVEDNLLTVGALIACSLLISRAAT 299 Query: 301 MLSSVTMVLGRMEMFKRARAAFEEMFDDTGPEQ-VIADVLRQDMRGLIQVVNLTLHLDKN 359 +LSS+ LGR+EMF+RARA F+++F++ PEQ ADVLRQDMRGLIQV NL LHLDK Sbjct: 300 VLSSLAAFLGRIEMFRRARAEFDQLFEE--PEQGPTADVLRQDMRGLIQVGNLLLHLDKK 357 Query: 360 EKPALDNVSLAIQPGEKVGIVGRSGSGKTTLMRALAGLHKIDAGKGQVLIDGVAVAAYAA 419 E P L N+SL IQPGEKVGIVGRSGSGK+TL+R LAGLH+ A +G VLIDGVAV AYA Sbjct: 358 ETPTLRNISLTIQPGEKVGIVGRSGSGKSTLLRTLAGLHQ--AEEGHVLIDGVAVTAYAE 415 Query: 420 PVRMRCIGYKPQEPFLFDGSLAANIFVGDRIDSNEYEAALAVSGVDDLIARGELRLDQML 479 VRMRCIG+KPQEPFLFDG++AANIFVGDR+ YEAALAVS +DDLIARGELRLDQ++ Sbjct: 416 EVRMRCIGFKPQEPFLFDGTVAANIFVGDRVPGQVYEAALAVSSLDDLIARGELRLDQLI 475 Query: 480 KAPGNLSGGQRQMVALARAVAGMPTVMLLDEPTTGIDLSTETRIIEKLMAYSMSAQRTLV 539 KAPGNLSGGQRQMVALAR +A P ++LLDEPTTGID TE RIIE+L+ Y + RTLV Sbjct: 476 KAPGNLSGGQRQMVALARVIACTPRILLLDEPTTGIDQQTEARIIERLVGY--AGGRTLV 533 Query: 540 VATHSTALLRRMDRIIVLNDGKIVADGPSATILQ 573 VATHS ALLR MDRI+V++ G+IVADGP A ILQ Sbjct: 534 VATHSPALLRHMDRIVVIDGGRIVADGPRAQILQ 567 >gi|300312350|ref|YP_003776442.1| bacteriocin/lantibiotic exporter/double-glycine peptidase domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 730 Score = 192 bits (489), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 174/566 (30%), Positives = 281/566 (49%), Gaps = 31/566 (5%) Query: 24 VYLTLMRAYGGRFVEIVVAGVLINVFGLFMPLYSRLVYDKVIGNHITETLWALTLGMALF 83 V+L + + +EIVVA V++++ L ++S VYD+VI H TL L +G+ L Sbjct: 162 VFLDAIGEFRPVLIEIVVASVVMSIIALGASIFSMQVYDRVIPTHGVATLIVLAIGVGLA 221 Query: 84 IVLELVLRIIRMYYIEQLAGRFDIEFDNRSVRRLLESKV---TAPVGVVLAKYRDLSSAR 140 I+ EL ++ R + ++++ D + RLL +V VG + + R R Sbjct: 222 ILFELGMKFARSHIMDKVVSGLDAKLSQALYERLLAVRVDQLPGSVGSLAGQLRGYEQIR 281 Query: 141 DLLSSNYMLMLIDLPFLAMYVVAVGLLGGHLVWVILVGGGMLVAAQLLCKIPATDYSNAA 200 +S + L+DLP ++V+ + L+ W+ LV V A L+ + + A Sbjct: 282 SFYTSQTLFTLVDLPLGLLFVLVIALIASP--WMALVPTVFGVVAILIGYLSNRKVARLA 339 Query: 201 MTSGIG---KIDKLASLVFGMETLKTSPLQDRLVKAFLSDAADNAVSQAKSR-FWMNAGY 256 S K L V G+ET+K+ + + ++ +A++ S R +AGY Sbjct: 340 DKSAAASNLKTGLLVETVEGVETIKSGSGGWKFLSRWIDVSAESIRSDMAMRAIGDHAGY 399 Query: 257 ALSTVGYTLISVGTLVIGVYLVEDNALTVGALIATSLLISRATSMLSSVTMVLGRM---E 313 +T+ S T++IG +LV + +T+GALIA S+L R +L+ V M+ G M Sbjct: 400 IAATLQQLSYST-TVIIGAFLVINGQITMGALIACSILGGR---ILAPVAMIPGLMVQRA 455 Query: 314 MFKRARAAFEEMF---DDTGPE-QVIADVLRQDMRGLIQVVNLTLHLDKNEKPALDNVSL 369 K A E+++ D G E Q+ D LR + R I+ T +D L Sbjct: 456 HTKATLAGLEKIYALQTDQGSERQLTPDNLRGEFR--IEEAKFTYAGSMLNAMTIDQ--L 511 Query: 370 AIQPGEKVGIVGRSGSGKTTLMRALAGLHKIDAGKGQVLIDGVAVAAYAAPVRMRCIGYK 429 I GE+V ++G G+GK+T++R L+GL++ +G++L+DG+ +A + IGY Sbjct: 512 TINAGERVAVLGPIGAGKSTILRLLSGLYRPQ--QGRILLDGLDMANINRLTLNQHIGYL 569 Query: 430 PQEPFLFDGSLAANIFVG--DRIDSNEYEAALAVSGVDDLIARGELRLDQMLKAPG-NLS 486 Q+ LF GSL N+ +G D D + + +G+ L++ LD ++ G LS Sbjct: 570 QQDHRLFVGSLRENLLIGLPDPGD-DVLRQVMERTGLLRLVSSHPKGLDLPIQEGGRGLS 628 Query: 487 GGQRQMVALARAVAGMPTVMLLDEPTTGIDLSTETRIIEKLMAYSMSAQRTLVVATHSTA 546 GGQ+Q+VA R + P V LLDEPT +D E + ++ +S RTLVV TH A Sbjct: 629 GGQKQLVAFTRLLLCQPNVFLLDEPTASMDEDLERHCL-NVLNQEISGGRTLVVVTHKPA 687 Query: 547 LLRRMDRIIVLNDGKIVADGPSATIL 572 L +DR+IV+ +IV DGP IL Sbjct: 688 FLPMVDRVIVVVGNRIVLDGPRDVIL 713 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 152/553 (27%), Positives = 264/553 (47%), Gaps = 35/553 (6%) Query: 32 YGGRFVEIVVAGVLINVFGLFMPLYSRLVYDKVIGNHITETLWALTLGMALFIVLELVLR 91 Y E+++ +++ + GL P++ ++V DKV+ NH TL + +G+ V E VL Sbjct: 159 YRKTLAEVLLISLVLQLIGLITPMFFQVVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLT 218 Query: 92 IIRMYYIEQLAGRFDIEFDNRSVRRLLESKVT----APVGVVLAKYRDLSSARDLLSSNY 147 IR + + D+E +R LL ++ G +A+ R+L + R L+ N Sbjct: 219 GIRTAIFANASSKIDVELGSRLFSHLLSLPLSYFQVRRAGDSIARVRELENIRSFLTGNA 278 Query: 148 MLMLIDLPF-------LAMYVVAVGL--LGGHLVWVILVGGGMLVAAQLLCKIPATDYSN 198 M +++D+ F + Y V++ L L V+V+L LV LL + ++ Sbjct: 279 MTLVLDIMFSFVFLGVMLWYSVSLSLIVLASIPVYVLL----SLVFTPLLRERLNDKFNK 334 Query: 199 AAMTSGIGKIDKLASLVFGMETLKTSPLQDRLVKAFLSD-AADNAVSQAKSRFWMNAGYA 257 +A L + GM+T+K ++ R + + AA A + + A A Sbjct: 335 SAENQSF-----LVETLTGMDTVKAMAVEPRWQQKWDKQLAAYVAAGLTTTNISLLASGA 389 Query: 258 LSTVGYTLISVGTLVIGVYLVEDNALTVGALIATSLLISRATSMLSSVTMVLGRMEMFKR 317 + V L++VG + +G LV N ++VG L+A ++L + S + + + + Sbjct: 390 VGLVS-KLVTVGIMWLGALLVVKNEMSVGELVAFNMLAGQVASPILRLAQLWNDFQQIGI 448 Query: 318 ARAAFEEMFDDTGPEQVIADVLR-QDMRGLIQVVNLTLHLDKNEKPALDNVSLAIQPGEK 376 + + ++ D +V + R + G I ++ + +SL I+PGE Sbjct: 449 SMSRLADVLD--ARTEVAGNRTRLPRVNGAISFDLVSFRYRPETPEVIRGLSLQIRPGEV 506 Query: 377 VGIVGRSGSGKTTLMRALAGLHKIDAGKGQVLIDGVAVAAYAAPVRMRCIGYKPQEPFLF 436 +GIVGRSGSGK+TL + + L+ + G+ + +DG +A + IG QE LF Sbjct: 507 IGIVGRSGSGKSTLAKLVQRLYICETGR--ISVDGQDIAIIDTASLRQQIGVVLQENTLF 564 Query: 437 DGSLAANIFVGDRIDSNEY--EAALAVSGVDDLIARGELRLDQMLKAPGN-LSGGQRQMV 493 S+ NI + D E EAA ++G D I D M+ G+ LSGGQRQ + Sbjct: 565 SRSIRDNIALADPSTPIEQIIEAA-KLAGAHDFICELPEGYDTMVGEQGSGLSGGQRQRI 623 Query: 494 ALARAVAGMPTVMLLDEPTTGIDLSTETRIIEKLMAYSMSAQRTLVVATHSTALLRRMDR 553 A+ARA+ P +++ DE T+ +D +E +II+ M + A RT+++ H + +R DR Sbjct: 624 AIARALITNPGILIFDEATSALDYESE-KIIQDNM-RQICAGRTVLIIAHRLSAVRDADR 681 Query: 554 IIVLNDGKIVADG 566 IIV+ G++ G Sbjct: 682 IIVMERGRVAESG 694 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 122/388 (31%), Positives = 199/388 (51%), Gaps = 39/388 (10%) Query: 201 MTSGIGKIDKLASLVFGMETLKTSPLQD-----RLVKAFLSDAADNAVSQAKSRFWM--- 252 + G KID++ S V T+ L D R+VKAF + + A + +R + Sbjct: 350 LRHGFEKIDRIWSEV-------TNVLADTIPGIRVVKAFAQEKREVARFREANRHNLMVN 402 Query: 253 ---NAGYALSTVGYTLIS-VGTLVI---GVYLVEDNALTVGALIATSLLISRATSMLSSV 305 N ++L T T ++ VG LV+ G++ V N +TVG L A ISR + L S+ Sbjct: 403 DRVNKIWSLFTPTVTFLTEVGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYTRLDSM 462 Query: 306 TMVLGRMEMFKRARAAFEEMFD-----DTGPEQVIADVLRQDMRGLIQVVNLTLHLDKNE 360 + ++ + ++A A + +FD + PE V + ++G I+V N+ Sbjct: 463 SRIVS---VTQKAAAGAKRIFDILDHVSSVPEPA-NPVHLEKVQGAIEVRNIGFRY--GN 516 Query: 361 KPALDNVSLAIQPGEKVGIVGRSGSGKTTLMRALAGLHKIDAGKGQVLIDGVAVAAYAAP 420 + + N+SL+I PGE +G+VG SGSGK+T++ + + D +G + IDGV + + Sbjct: 517 RAVIRNMSLSIAPGEMIGLVGHSGSGKSTMVNLICRFY--DVSEGAIRIDGVDIRSLPIS 574 Query: 421 VRMRCIGYKPQEPFLFDGSLAANIFVGD-RIDSNEYEAALAVSGVDDLIARGELRLDQML 479 R IG QEPFLF G++A NI G E AA + + I R D ++ Sbjct: 575 EYRRNIGLVLQEPFLFFGTIAENIAYGKPEATREEIIAAARAAHAHEFILRLPQGYDSLV 634 Query: 480 KAPGN-LSGGQRQMVALARAVAGMPTVMLLDEPTTGIDLSTETRIIEKLMAYSMSAQRTL 538 G LSGG+RQ +++ARA+ P +++LDE T+ +D +TE I + L ++ RT Sbjct: 635 GERGQALSGGERQRISIARALLIDPRILILDEATSSVDTTTEKEIQKALD--NLVQGRTT 692 Query: 539 VVATHSTALLRRMDRIIVLNDGKIVADG 566 + H + LR+ DR++VL+ G++V G Sbjct: 693 IAIAHRLSTLRKADRLVVLDRGQVVEVG 720 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 105/335 (31%), Positives = 171/335 (51%), Gaps = 23/335 (6%) Query: 252 MNAGYALSTVGYTLISVGT---LVIGVYLVE--DNALTVGALIATSLLISRATSMLSSVT 306 M A ++ STV T + T +VI + L++ + +TVG + S T+ML +T Sbjct: 237 MTAAFS-STVPITQLMTATAVAVVIVMALIQSGNGQITVGGFV------SFITAMLMLLT 289 Query: 307 MVLGRMEM---FKRARAAFEEMFD--DTGPEQVIADVLRQDMRGLIQVVNLTLHLDKNEK 361 + E+ +R AA EE++ D E++ + L G + V + +E+ Sbjct: 290 PLKQLAEINGPLQRGMAAAEEVYKLIDKTTERITGEALAGRATGQLDFVEVGFAYPGHEQ 349 Query: 362 PALDNVSLAIQPGEKVGIVGRSGSGKTTLMRALAGLHKIDAGKGQVLIDGVAVAAYAAPV 421 AL N++L ++ GE + VG SG GK+TL+ + G + + G++ +DG + + P Sbjct: 350 LALKNINLHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCSS--GEIRLDGRDIETISLPS 407 Query: 422 RMRCIGYKPQEPFLFDGSLAANIFVGD-RIDSNEYEAALAVSGVDDLIARGELRLDQMLK 480 + I Q LFD +LAANI GD D EAA+ + + D++A L L Sbjct: 408 LRQQIAMVNQNTVLFDDTLAANIAYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLG 467 Query: 481 APGN-LSGGQRQMVALARAVAGMPTVMLLDEPTTGIDLSTETRIIEKLMAYSMSAQRTLV 539 G+ LSGGQRQ VA+ARA+ +++LDE T+ +D +E R ++ + M + T V Sbjct: 468 DNGSRLSGGQRQRVAIARAIYKDAPILILDEATSALDTESE-RAVQAALDRLMQGRTTFV 526 Query: 540 VATHSTALLRRMDRIIVLNDGKIVADGPSATILQQ 574 +A H + + R DRI+VL G+I G +L+Q Sbjct: 527 IA-HRLSTIERADRIVVLAHGQIAEIGTHQALLEQ 560 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,576,535 Number of extensions: 64046 Number of successful extensions: 638 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 476 Number of HSP's successfully gapped: 140 Length of query: 574 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 484 Effective length of database: 1,193,720 Effective search space: 577760480 Effective search space used: 577760480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)