BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0144.p
         (557 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311131|ref|YP_003775223.1| hypothetical protein Hsero_1805...   910   0.0  
gi|300312348|ref|YP_003776440.1| centriolin protein [Herbaspiril...    82   8e-17

>gi|300311131|ref|YP_003775223.1| hypothetical protein Hsero_1805
           [Herbaspirillum seropedicae SmR1]
          Length = 553

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/552 (81%), Positives = 498/552 (90%), Gaps = 2/552 (0%)

Query: 1   MKNLRNFYALAAIPSLFLLLGGFLFRDFVLHAIRINPFLNLFIIGVAVFGVALIVYNMWR 60
           MKNLR FYALAAIP+L LLLG FLFR FVLHAI+INPFLNLFII VAVFG+ALI YN+WR
Sbjct: 1   MKNLRQFYALAAIPTLLLLLGAFLFRGFVLHAIQINPFLNLFIIAVAVFGIALIGYNLWR 60

Query: 61  VNWEHNKLALFYARVNDGESMEDLVKAPEFQGSEIAKVLVSVANTKGRLTSRIEQETIEG 120
           VNWEH KL  FY R   GESME LVKAPEF+G+EI +VLVSVA+TKGRLTSRIEQETIEG
Sbjct: 61  VNWEHAKLMQFYERTKAGESMESLVKAPEFEGTEIGQVLVSVASTKGRLTSRIEQETIEG 120

Query: 121 SLSDLTAHLEAKTEFPHFLTGFMIALGLLGTFIGLLETLVGTAALIDGFGKATQGGDMDA 180
           SL DL AHL+AKTEFP FLTGFMIALGLLGTFIGLLETLV TAALIDGFGKA+ GGDMDA
Sbjct: 121 SLHDLRAHLDAKTEFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGKASSGGDMDA 180

Query: 181 SFMHLVSDLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAANKKLVSRARECISEMVQ 240
           SFMHLV+DLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAA+KKLVSRARECIS+MVQ
Sbjct: 181 SFMHLVADLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLVSRARECISDMVQ 240

Query: 241 HVIHDMSGPGTNASARQGVSEQFLAEFLQDLMVLQRESIMAARASSEASMQAGIKLEGMN 300
           HV+HDMSGP   A+ RQGVSE FLAEFLQDLMVLQRESIMAAR SSEAS+QAGIKLEG+N
Sbjct: 241 HVVHDMSGPA--ATQRQGVSESFLAEFLQDLMVLQRESIMAARNSSEASLQAGIKLEGLN 298

Query: 301 DRLQNIVELFHASMDESKNLRQLVSFGPRMHEVGQQTLEEIRNVGQIINQKMTSARDLTQ 360
           DRL NIV+LF+ SM+ES++LRQLV+FGPRMHE  QQTLEEIRNVGQ+IN K+TSARDL+ 
Sbjct: 299 DRLNNIVQLFNDSMEESRSLRQLVAFGPRMHETAQQTLEEIRNVGQLINTKITSARDLSD 358

Query: 361 SLSLLEERLSVNGDIALRSFDMLPKIVSTMEGGQMSLSSALTSLQAQQSEAANMTEKTAQ 420
           SLS LEERLSVNGDIA R+F++LP+IV+T++ GQ++LSSALTSLQ QQ E ANM EK AQ
Sbjct: 359 SLSSLEERLSVNGDIANRTFEVLPQIVTTIQAGQLALSSALTSLQTQQGEIANMNEKNAQ 418

Query: 421 HIAQMPTLLNQISIRIADELGAIQHQGEIHSAVSERLGELGKAIGENSSNMTRDALSSRQ 480
           +IAQ+P LLNQIS+R+ADE+GAIQ+QGE+ + V+ RL ELG  IGENSSNM RDALS+RQ
Sbjct: 419 NIAQLPALLNQISVRLADEMGAIQYQGELQATVAARLNELGNTIGENSSNMARDALSARQ 478

Query: 481 LQIDLAKHMAMMNDRVKNLTAIPTSLTSITEALMRQNINTQTVIDEMRSGRQTMVKDLRL 540
           LQIDLAKHMA  NDRVKNL AIP SLTSITEALMRQNIN QTVIDEMR+GRQTMVKDLRL
Sbjct: 479 LQIDLAKHMATQNDRVKNLGAIPQSLTSITEALMRQNINWQTVIDEMRTGRQTMVKDLRL 538

Query: 541 EMREAIRELSMI 552
           EMREAIRE++ +
Sbjct: 539 EMREAIREITAV 550


>gi|300312348|ref|YP_003776440.1| centriolin protein [Herbaspirillum
           seropedicae SmR1]
          Length = 517

 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 22/234 (9%)

Query: 12  AIPSLFLLLGGFLFR---DFVLHAIRINPFLNLFIIGVAVFGVALIVYNMWRVNWEHNKL 68
           A+ + ++L+  +L++   + + HA   NPF  + ++ + V G  L ++   R+  E  ++
Sbjct: 25  AVFAAYVLVNLWLYQRVMELIAHAA--NPFFVIVLVVITVLGQVLTIWQAKRILAEGRQV 82

Query: 69  ALFYARVN--------DGESME-DLVKAPEFQGSEIAKVLVSVANTKGRLTSRIEQETIE 119
            L   RV         +G ++E +LVK  E +  +I ++L  + N  GR T R ++  ++
Sbjct: 83  DLLSGRVKTFARDGRTEGAALEQELVK--EDRNFDIDRLLRQLKNADGR-TIRFDRTQLQ 139

Query: 120 GSLSDLTAHLEAKTEFPHFLTGFMIALGLLGTFIGLLETLVGTAALIDGFGK-ATQGG-D 177
                    L+ +T  P ++   +I LGL GTF+GL+ TL   A LI  F    T+GG D
Sbjct: 140 HQFDGFAGDLQRRTLLPQYIANTLIGLGLFGTFLGLIVTLKEVALLIGMFSSIGTEGGSD 199

Query: 178 MDASFMHLVSDLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAANKKLVSRA 231
           M   F   +S    PLA MG AF AS+ GL GS+   + L   +   + + +RA
Sbjct: 200 MMGKFFERMSG---PLAGMGDAFVASLLGLGGSIVNNVQLLACKKLQRLVSARA 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,400,337
Number of extensions: 52178
Number of successful extensions: 263
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 2
Length of query: 557
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 467
Effective length of database: 1,193,720
Effective search space: 557467240
Effective search space used: 557467240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)