BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0143.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311130|ref|YP_003775222.1| Type I antifreeze protein:HlyD ...   254   2e-69
gi|300312349|ref|YP_003776441.1| hemolysin-type secretion transm...   109   1e-25
gi|300312188|ref|YP_003776280.1| hemolysin secretion-related tra...    81   4e-17

>gi|300311130|ref|YP_003775222.1| Type I antifreeze protein:HlyD
           family secretion protein [Herbaspirillum seropedicae
           SmR1]
          Length = 457

 Score =  254 bits (650), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/157 (78%), Positives = 142/157 (90%), Gaps = 4/157 (2%)

Query: 1   VSRSEVRAPMDGIVNRVLINTVGGVVKPGDAIIEMTPTDDKLVIEAKVAPTDRAQLMTGA 60
           VSRSEV+APMDG+VNRV+INT+GGVV+PGD IIEMTP+DDKLVIEA+++PTDRA+L+TGA
Sbjct: 301 VSRSEVKAPMDGVVNRVMINTIGGVVRPGDPIIEMTPSDDKLVIEARISPTDRAELVTGA 360

Query: 61  PARVKVSAYDYGVYGAMKGVVTEVSADTVPEE---RGERYYRVKIEVTR-DPKLDTGLPL 116
            ARVKVSAYDYGVYGAM GVVTE+SADTVP+E   RGER+YR+KIEV R   +L   L L
Sbjct: 361 RARVKVSAYDYGVYGAMDGVVTEISADTVPDEGSPRGERFYRLKIEVKRGHDELQQKLAL 420

Query: 117 MPGMTATADMIVGRRTVWQYLMSPLSRFGQTALREPR 153
           MPGMTA+AD+IVGRRTVWQYLMSPLSRFGQ ALREPR
Sbjct: 421 MPGMTASADIIVGRRTVWQYLMSPLSRFGQGALREPR 457


>gi|300312349|ref|YP_003776441.1| hemolysin-type secretion
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 386

 Score =  109 bits (272), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 9/158 (5%)

Query: 1   VSRSEVRAPMDGIVNRVLINTVGGVVKPGDAIIEMTPTDDKLVIEAKVAPTDRAQLMTGA 60
           +  +E++AP DG+V  + + T+GGVV+ GD ++E+ P D+ L++EAKV+  D A +  G 
Sbjct: 230 LEHTELKAPADGVVKNIKVTTIGGVVRSGDVVMEILPVDN-LIVEAKVSTADSAYVKVGQ 288

Query: 61  PARVKVSAYDYGVYGAMKGVVTEVSADTVPEERGER---YYRVKI----EVTRDPKLDTG 113
            A VK+ AYDY +YG + G V  VS DT+ +E  +    YYRV I     V +  K D  
Sbjct: 289 AANVKLDAYDYSIYGTLNGHVVYVSPDTLLDETRQGAMPYYRVHIALEEAVFKGRKAD-A 347

Query: 114 LPLMPGMTATADMIVGRRTVWQYLMSPLSRFGQTALRE 151
           + + PGMTAT ++    RTV  +L  P+++  Q ++ E
Sbjct: 348 IQVKPGMTATVEIKANTRTVLSFLTKPIAKTLQESMGE 385


>gi|300312188|ref|YP_003776280.1| hemolysin secretion-related
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 447

 Score = 81.3 bits (199), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 2/146 (1%)

Query: 8   APMDGIVNRVLINTVGGVVKPGDAIIEMTPTDDKLVIEAKVAPTDRAQLMTGAPARVKVS 67
           AP+ G V ++ ++T+GGVV     ++++ P D ++ +EA +   D   +  G  A VK+ 
Sbjct: 301 APVTGTVQQLTVHTIGGVVPAAQPLMQIVPQDSQIEVEAMLENKDVGFVEIGQAAEVKID 360

Query: 68  AYDYGVYGAMKGVVTEVSADTVPEERGERYYRVKIEVTRDPKLDTG--LPLMPGMTATAD 125
           A+DY  YG +   V  +S D + +E+    Y  +I + +   +  G  + L  GM A  +
Sbjct: 361 AFDYTKYGTLPARVVHISRDAIQDEKKGLLYSARIVLDQSSLIVDGRKVQLSAGMAANVE 420

Query: 126 MIVGRRTVWQYLMSPLSRFGQTALRE 151
           +  G R V +Y +SPL R  + AL E
Sbjct: 421 IKTGNRRVIEYALSPLIRHQKEALHE 446


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 496,940
Number of extensions: 19815
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)