BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0139.p
         (143 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311129|ref|YP_003775221.1| hypothetical protein Hsero_1803...   134   2e-33

>gi|300311129|ref|YP_003775221.1| hypothetical protein Hsero_1803
           [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score =  134 bits (338), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/133 (63%), Positives = 103/133 (77%), Gaps = 2/133 (1%)

Query: 1   MDAGSKEQNFWPGFVDALSNVVLVMIFVVVVFVVTLFYYSQKLAEIRVSKMVSKGAVQVQ 60
           M++G KEQNFWPGFVDALSNVVLVMIFVVVVFVVTLFYYSQKLA+++VSK++S+G VQV 
Sbjct: 1   MESG-KEQNFWPGFVDALSNVVLVMIFVVVVFVVTLFYYSQKLAQMKVSKLISQGHVQVV 59

Query: 61  SGSTKTKPDATDAPQGTDADTARLKSESRDKTNEIEKLKREIADLKSRQAAPPLQADAGS 120
                ++ DA   P+ +    A    E R+K  EIE+LKRE+A LK++ AAPPLQ+DAGS
Sbjct: 60  GAQKASQTDAQATPESSSTQAAETPGE-REKAQEIEQLKREVATLKAKLAAPPLQSDAGS 118

Query: 121 LRSDAAPXSPRLL 133
           LRS AAP SP  +
Sbjct: 119 LRSAAAPSSPNAI 131


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.127    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 351,163
Number of extensions: 10980
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,255,275
Effective search space: 82848150
Effective search space used: 82848150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)