BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0138.p
         (452 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311128|ref|YP_003775220.1| outer membrane protein [Herbasp...   532   e-152

>gi|300311128|ref|YP_003775220.1| outer membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 547

 Score =  532 bits (1371), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/486 (59%), Positives = 346/486 (71%), Gaps = 64/486 (13%)

Query: 7   TPGQAVSVGASATSAASTAVADAATKTEAAAAS-NDEILALLRQSDPAFTGSAIDLPYIT 65
           +P Q + +GA    AA       A   E+A  S  DEIL LLRQ+DP F+G+AI LP I+
Sbjct: 54  SPPQ-IRLGADPGGAAVGDFKLPALPGESAMGSPQDEILQLLRQADPEFSGNAIVLPQIS 112

Query: 66  SETVGEEQVPF--LTLDQVIDLALDNSYSYAATSAQADQADYAAKAALGQLGPTLDVRTQ 123
              V  E  P   LTL QV+DLA++NSYSYAATSAQADQA YAA+A  GQ+GPTLDVR Q
Sbjct: 113 ---VVPEGAPVNDLTLSQVLDLAVNNSYSYAATSAQADQARYAARATAGQMGPTLDVRAQ 169

Query: 124 KGREYSSPASFRDDNGNIVQ-ADQHKRWDATLIGRQPIFAPGSYFDFQKQRAMSRAADQR 182
           KG+EYSSP+S  D N  +V+ A  HKRWD T+IGRQP+FAPGSYFD++K  +++ AAD R
Sbjct: 170 KGQEYSSPSSVIDPNTGLVRRASDHKRWDVTVIGRQPVFAPGSYFDYRKASSLADAADLR 229

Query: 183 RDDARESLYYSAIKAYYDVLRAYASLSFSRSYAQRMKDLLDYMGKRVEGGGASKIDYDRV 242
           R+DARE+LYY+AIK+YYDV+RAYA+LSFSRSYAQRM  LL+YM KR+EGGGAS+ID++RV
Sbjct: 230 REDARETLYYTAIKSYYDVMRAYATLSFSRSYAQRMNALLEYMRKRLEGGGASRIDFERV 289

Query: 243 RGRSLQADSAILDSEGTLDSTLVTLTQLIGRRVRQVQVPDRMMPKVPPTS---------- 292
           RGRSL A +A+ ++EG L+S +V+L Q+ GR++ Q++VPD MMP VP TS          
Sbjct: 290 RGRSLTAQAAVAEAEGALESAMVSLNQITGRKIEQLEVPDHMMPPVPDTSKLALKDIYDT 349

Query: 293 ----RLALQDXD----------------------QT--------------------LVTD 306
               R A QD +                      QT                    L TD
Sbjct: 350 NPGVRAARQDVEAANQELKSARAKFSPTLAVEFTQTKTRGAGGAIDTTNPTANSLQLSTD 409

Query: 307 RRLMLVMTMNLLNGGSDAYYQRQIGAKLVEKSNTASDLERKLKEQVEINYRTLEAVKKRM 366
           RRLMLVMTMNLLNGGSD YY +Q GAK VEKSNT  DLERKL+EQ+EINYRTL AV+KRM
Sbjct: 410 RRLMLVMTMNLLNGGSDVYYSKQAGAKYVEKSNTVLDLERKLREQIEINYRTLGAVRKRM 469

Query: 367 NISRDIYVNNANVADVFLEQLSTGSKQLLDVLDAYQQAYQTRMDFALLLFQQADISYQIL 426
           +ISR  Y+ NANVADVFL+QLS GSKQL+DVLDAYQQAYQ R+DF+ LLFQQADISYQIL
Sbjct: 470 DISRQAYLTNANVADVFLDQLSAGSKQLIDVLDAYQQAYQARVDFSNLLFQQADISYQIL 529

Query: 427 RNTGRA 432
           RNTGRA
Sbjct: 530 RNTGRA 535


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,129,065
Number of extensions: 39615
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 2
Length of query: 452
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,203,190
Effective search space: 437961160
Effective search space used: 437961160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)