BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0136.p
         (460 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311127|ref|YP_003775219.1| HSP90 family high temperature m...   842   0.0  

>gi|300311127|ref|YP_003775219.1| HSP90 family high temperature
           molecular chaperone G protein [Herbaspirillum
           seropedicae SmR1]
          Length = 636

 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/460 (89%), Positives = 436/460 (94%)

Query: 1   VILHLREGEDEFLSSWQLKNIIRKYSDHISLPILMQKEEWDEEKKETVAKDELETVNQAS 60
           +ILHLREGEDEFLSSWQLK+IIRKYSDHISLPI M KEEWDEEKKETV KDELETVNQAS
Sbjct: 177 IILHLREGEDEFLSSWQLKSIIRKYSDHISLPIQMNKEEWDEEKKETVQKDELETVNQAS 236

Query: 61  ALWTRSKSDITPEQYEEFYKHISHDFGAPLAYTHNRVEGRSEYTQLLYIPARAPFDMWDR 120
           ALWTRSKS+ITPEQYEEFYKH+SHDFGAPLAYTHNRVEGRSEYTQLLYIPARAPFD+WDR
Sbjct: 237 ALWTRSKSEITPEQYEEFYKHVSHDFGAPLAYTHNRVEGRSEYTQLLYIPARAPFDLWDR 296

Query: 121 NKRGGIKLYVKRVFIMDDAEQLMPVYLRFVKGVIDSADLPLNVSREILQESRDVKAIREG 180
           NKRGGIKLYVKRVFIMDDAEQLMPVYLRFVKGVIDSADLPLNVSREILQESRDV+AIR+G
Sbjct: 297 NKRGGIKLYVKRVFIMDDAEQLMPVYLRFVKGVIDSADLPLNVSREILQESRDVRAIRDG 356

Query: 181 STKRVLSLLEELANSDEQEQKDKYAGFWTEFGQVLKEGIGEDAANKERIAKLLRFASTHN 240
           S KRVLSLLEELANSDEQ QKDKY+ FWTEFGQVLKEG+GEDAANKERIAKLLRFASTHN
Sbjct: 357 SAKRVLSLLEELANSDEQAQKDKYSTFWTEFGQVLKEGVGEDAANKERIAKLLRFASTHN 416

Query: 241 DSDAQTTSFADYVGRMKEGQDKIYYVTGENYHAAKNSPHLEIFRKKGVEVLLLTDRVDEW 300
           DSD Q  S ADYVGRMKEGQDKIYYVT E + AAKNSPHLEIFRKKGVEVLLLTDRVDEW
Sbjct: 417 DSDVQNVSLADYVGRMKEGQDKIYYVTAETWQAAKNSPHLEIFRKKGVEVLLLTDRVDEW 476

Query: 301 MLSFLQDFDGKELASVAKGGLDLGSLENEAEKKQHEETETQFKDLVEKMKTSLGDKAKDV 360
           MLSFL DFDGKELASVAKGGLDLG LENE EKKQHEET+ ++KDLVEKMKT+L DKAK+V
Sbjct: 477 MLSFLTDFDGKELASVAKGGLDLGKLENEDEKKQHEETQAEYKDLVEKMKTALADKAKEV 536

Query: 361 RVTFRLTDSPACLVADENELSGNLLRMLKAAGQDTPEAKPILEINPEHPLVQRLKYEDAK 420
           RVTFRLTDSPACLVADENELSGNL+RMLKAAGQ  PE+KP LEINP+HPLVQRLKYE+A+
Sbjct: 537 RVTFRLTDSPACLVADENELSGNLVRMLKAAGQAAPESKPTLEINPDHPLVQRLKYEEAR 596

Query: 421 FDDWSHILFDQALLAEGGALTDPSGFVKRLNDMLLGMASK 460
           FDDWSHIL+DQALLAEGGAL DP+ FVKRLNDMLL MA+K
Sbjct: 597 FDDWSHILYDQALLAEGGALADPASFVKRLNDMLLAMAAK 636


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,399,711
Number of extensions: 58127
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 372
Effective length of database: 1,203,190
Effective search space: 447586680
Effective search space used: 447586680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)