BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0134.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311125|ref|YP_003775217.1| GNAT family acetyltransferase [...   215   2e-57

>gi|300311125|ref|YP_003775217.1| GNAT family acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 196

 Score =  215 bits (548), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/180 (57%), Positives = 131/180 (72%)

Query: 5   LRHSRILLRPWRAEDAAACAAMTADPEVMRYFPSVLSPADNALLVKRIDEHFNEHGYGLW 64
           LR  R+LLR WRA D A  AA+ AD +VM++FP+ LS  ++ +L+ RI+ HF +HG+G W
Sbjct: 12  LRGPRVLLRRWRASDRAPMAAINADAQVMQHFPAPLSRQESDVLIDRIEAHFAQHGFGAW 71

Query: 65  VLEVPGELEFAGFVGLLRVAFEAHFTPAVEIGWRLVPAAWGKGYATEAAQAVLRHAFNVL 124
            LE+PG  EFAG VGL+RVAF A FTPAVEIGWRL PA W +GYA+EAA+  LR+ F  L
Sbjct: 72  ALEIPGVTEFAGLVGLMRVAFAAPFTPAVEIGWRLAPACWDQGYASEAARCALRYGFETL 131

Query: 125 GMKEIVSFTAAGNKRSQAVMRRLGMYTRAEDNFEHPRLPTGHALSVHVLYRLRREQWLLQ 184
            + +IVSFT   N+RS AVM+RLGM     ++F HPRLP GH L +H LYR+ R+QWL Q
Sbjct: 132 ELAQIVSFTVPENQRSLAVMQRLGMQCDVREDFLHPRLPPGHRLRLHRLYRIERQQWLAQ 191


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 646,651
Number of extensions: 26313
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)