BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0131.p
         (161 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311121|ref|YP_003775213.1| G:T/U mismatch-specific DNA gly...   197   5e-52

>gi|300311121|ref|YP_003775213.1| G:T/U mismatch-specific DNA
           glycosylase [Herbaspirillum seropedicae SmR1]
          Length = 184

 Score =  197 bits (500), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 117/155 (75%), Gaps = 1/155 (0%)

Query: 6   SFPHVTNANTRVLILGSLPGDASLAHSQYYAHPQNKFWELISEVVGENLRAMEYDQRLLA 65
           SFP V   +TR LILGSLPG ASL   QYY HP+N FW+L+ EV+G +L AM+Y  RL  
Sbjct: 4   SFPPVVARDTRTLILGSLPGVASLQMRQYYGHPRNAFWKLVGEVLGADLYAMDYPTRLQT 63

Query: 66  LLKHGVGLWDVIAEARRTGSLDSNIADHAGNDLAGLLDELPQLTTIGFNGGTAAKLGLKV 125
           LL H VGLWDVIA+ARR GSLDS+I DH+ NDL  LL +LP L TI FNGGTA K+GL+ 
Sbjct: 64  LLAHRVGLWDVIAQARRIGSLDSDIRDHSQNDLQTLLAQLPALETIAFNGGTAGKIGLQA 123

Query: 126 LGERAAQYRIVLLPSSSPAH-TMAYAKKLAQWLNL 159
           LGE+A  YRI+LLPSSSPA+  ++YA+KLA W  L
Sbjct: 124 LGEQAGCYRILLLPSSSPAYAALSYAQKLASWRQL 158


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 541,688
Number of extensions: 22304
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,250,540
Effective search space: 103794820
Effective search space used: 103794820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)