BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0128.p
         (280 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311119|ref|YP_003775211.1| spermidine synthase [Herbaspiri...   436   e-123

>gi|300311119|ref|YP_003775211.1| spermidine synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  436 bits (1121), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/278 (74%), Positives = 233/278 (83%), Gaps = 6/278 (2%)

Query: 1   MLIKRKSIEAQANTKAGPGPDKDKANSKAKPRSKVTAPRKPRFAPVTLSEQDGVRYLHFG 60
           MLI+RKSIEAQANTKAGP   + +  + A      + PRK ++APVTLSE +GVRYLHFG
Sbjct: 1   MLIRRKSIEAQANTKAGPNRRRQQLEADA------SKPRKIKYAPVTLSELEGVRYLHFG 54

Query: 61  TEWVQGAMRIRKPDWIELEYAQQMMSWMLFNQAPQHIVQLGLGTAALTKFSYRQFPKANV 120
           TEWVQGAMRIRKPDWIELEYAQQMM+WMLFN+ P+HIVQLGLGT ALTKFSYRQFP+A V
Sbjct: 55  TEWVQGAMRIRKPDWIELEYAQQMMAWMLFNRDPRHIVQLGLGTGALTKFSYRQFPQAQV 114

Query: 121 TAVELNPSVIAICHSMFKLPPEDDRLSLLEMDANDFIHDEQRHGTIDALQVDLYDATARG 180
           TAVELNP+VI ICHSMFKLP  D+RL +LE DA DFI     HG IDALQVDLYDATARG
Sbjct: 115 TAVELNPAVITICHSMFKLPEPDERLMILESDAMDFIVHAASHGIIDALQVDLYDATARG 174

Query: 181 PMLDTPEFYKACRDSLSEDGVMTVNLFGDHPSYAKNLKAMRYAFDQVISLPEVHDGNVVA 240
           P+LDTPEFY+AC DSL+  GVMTVNLFGDHPSYAKNL+AM +AFD V+SLPEVHDGNVVA
Sbjct: 175 PVLDTPEFYQACYDSLAAGGVMTVNLFGDHPSYAKNLRAMEHAFDTVVSLPEVHDGNVVA 234

Query: 241 IGFRNAVEFDFPALYERAEEIKAATKLPAKSWVNGIKS 278
           + F+  V+FDFP LY RA  I+  TKLPAKSWVNGIKS
Sbjct: 235 LAFKGEVQFDFPELYARAALIETQTKLPAKSWVNGIKS 272


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 896,935
Number of extensions: 36359
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,222,130
Effective search space: 239537480
Effective search space used: 239537480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)