BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0125.p
         (234 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313091|ref|YP_003777183.1| thiopurine S-methyltransferase ...   335   2e-93

>gi|300313091|ref|YP_003777183.1| thiopurine S-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  335 bits (860), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 157/218 (72%), Positives = 183/218 (83%)

Query: 16  MEAEFWLERWRDGRTHFHQTRVTPLLQKYWPALALPQGSQVLVPLAGKSLDMVWLASQGH 75
           MEAEFWLERWRDGRTHFHQ+RVTPLLQKYWP+LALP GS VLVPL GKSLDM+WLA QGH
Sbjct: 1   MEAEFWLERWRDGRTHFHQSRVTPLLQKYWPSLALPAGSTVLVPLCGKSLDMLWLAEQGH 60

Query: 76  RVLGVELSQLAVEQFFDENRLQPQIRESAYGRHYTAGDVEIICGDIFKLDAALLSACVGV 135
           RVLGVELS+LA+ QFF E++L P + ESA GRHY AG++E+ICGDIF L+ A L+AC G 
Sbjct: 61  RVLGVELSELAITQFFSEHQLVPLVHESAQGRHYVAGNIELICGDIFALEEATLAACAGA 120

Query: 136 YDRAALVALPADMRARYARHVYGQLSAHYRGILITLDYPQEQMDGPPFSVGDAEVQAIFA 195
           YDRAAL+ALP  MRARY   VYG+L A  R +LITL+Y Q++MDGPPFSV + EV  ++A
Sbjct: 121 YDRAALIALPPAMRARYVTEVYGRLPAQARSLLITLEYDQQKMDGPPFSVSEEEVLRLYA 180

Query: 196 AHSEALVIDRRDILDKEPKFSERGVSRLDTVVYQLQRK 233
            HSEA  IDRRDILDKEPKF ERG+S L+TVVY+LQR+
Sbjct: 181 PHSEAQAIDRRDILDKEPKFLERGLSALETVVYRLQRR 218


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 782,665
Number of extensions: 33629
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,231,600
Effective search space: 187203200
Effective search space used: 187203200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)