BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0116.p (537 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 766 0.0 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 573 e-164 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 512 e-146 gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 506 e-144 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 460 e-130 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/536 (77%), Positives = 468/536 (87%), Gaps = 2/536 (0%) Query: 1 MNIIGNMRIGKRLALGFAVILAFSIVITAIGIWRLQTVSSATREMMSQPLLKERLIGDWY 60 MNIIGNM IG+RL LGFA+IL FSI+I IG+WRL V+ ATREMM++PL ERL+ DWY Sbjct: 1 MNIIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWY 60 Query: 61 ANLASGIRRTIAIAKSSDPALGPYFAAEAAASSKGSGEYQKKVEALLESDEEKKLFQKIG 120 NL +GIRRTIAIAKSSDPALGPYFAAE AASSK SGEYQK+VEALL + EEK LFQKIG Sbjct: 61 TNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIG 120 Query: 121 EQRKLYLSSRDAINKAKAAGNIEEAERVLEKDFVPASNAYQDTMRQLVELQRKDIDETAK 180 E RKLYLSSRD INKAKAAGN EEA R+L++ FVP + AYQDTMR+LV+ QRK++D+TA+ Sbjct: 121 ELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAR 180 Query: 181 HIDIIAEDSRILLLALEGLILVLGVLCAWYLTVGITRPINSAVTISRRVAEGDLTSDVQV 240 ID IA SR L+L LEGLIL+LG++ A YLT+GIT+P++ AV +SR VAEGDL+S++ V Sbjct: 181 EIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAV 240 Query: 241 GSKDETGQLLQALQDMNISLRGIVSNVRTGTDTIATASSEIAAGNLDLSSRTEQQASALE 300 S+DETGQLLQ+L+DMN SLRGIVSNVR+GTDTI+TASSEIAAGNLDLSSRTEQQAS+L Sbjct: 241 TSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLA 300 Query: 301 ETASSMEELISTVKQNADNARQANQLAVSASEIATQGGGVVGQVVDTMGAINDSSRKIVD 360 ETAS+MEELISTV+QNADNARQA+QLA SAS +A QGGGVV QVVDTMGAIN SSRKIVD Sbjct: 301 ETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIND 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LIND Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIND 420 Query: 421 SVEKVGNGSKLVEQAGATMAEVVNSVRRVTDIVAEISSASEEQTTGIEQINHAITQMDQV 480 SV KV +GS+LVEQAG TM EVV+SVRRVTDIVAEIS+AS EQT GIEQIN AITQMDQV Sbjct: 421 SVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQV 480 Query: 481 TQQNAALVEEAAAAAASMQSQADSLAQLVSVFTLSGTPALPAARRTIDITPSEPRL 536 TQQNAALVEEAAAAAASMQ+QA L Q+VSVF LS P RR ID+TPS P L Sbjct: 481 TQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRLSERE--PLVRREIDVTPSSPVL 534 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 573 bits (1477), Expect = e-164, Method: Compositional matrix adjust. Identities = 344/541 (63%), Positives = 416/541 (76%), Gaps = 4/541 (0%) Query: 1 MNIIGNMRIGKRLALGFAVILAFSIVITAIGIWRLQTVSSATREMMSQPLLKERLIGDWY 60 M NM+IG+RLALGFAVILA + V+ A+ IWRLQ +++AT EMM +PL KERL+ DWY Sbjct: 1 MRYFANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWY 60 Query: 61 ANLASGIRRTIAIAKSSDPALGPYFAAEAAASSKGSGEYQKKVEALLESDEEKKLFQKIG 120 + + +RRT AIAKSSDP+L +FA +AAA+S+ S E QK +EAL+ESD+EK +F K+G Sbjct: 61 RTIHTSVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLG 120 Query: 121 EQRKLYLSSRDAINKAKAAGNIEEAERVLEKDFVPASNAYQDTMRQLVELQRKDIDETAK 180 E RK Y+ RDAI+KAKA G EEA ++L F A Y D ++QL+ LQR +ID+ A Sbjct: 121 EVRKDYIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAA 180 Query: 181 HIDIIAEDSRILLLALEGLILVLGVLCAWYLTVGITRPINSAVTISRRVAEGDLTS--DV 238 HI + +SR L+LAL L +VLG L A L +GITRP+ AV ++ VA GDLT D Sbjct: 181 HIQTVYRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDE 240 Query: 239 QVGSK-DETGQLLQALQDMNISLRGIVSNVRTGTDTIATASSEIAAGNLDLSSRTEQQAS 297 ++ ++ DETG+L+ AL M +L IV VR GTD IATAS EIA GNLDLS+RTE+QA Sbjct: 241 RLAARGDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIATGNLDLSARTERQAG 300 Query: 298 ALEETASSMEELISTVKQNADNARQANQLAVSASEIATQGGGVVGQVVDTMGAINDSSRK 357 ALEETAS+MEEL STV QNADNARQANQLA SAS +A QGG VV QV+ TMG+IN+SSRK Sbjct: 301 ALEETASAMEELTSTVSQNADNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRK 360 Query: 358 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVL 417 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK L Sbjct: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKAL 420 Query: 418 INDSVEKVGNGSKLVEQAGATMAEVVNSVRRVTDIVAEISSASEEQTTGIEQINHAITQM 477 I+DSV KVG+GS+LV +AG+TM EVV SVR+V DIV+EIS+AS EQ+ GI Q+N AIT M Sbjct: 421 IDDSVAKVGSGSELVTRAGSTMDEVVASVRQVADIVSEISAASSEQSDGISQVNLAITDM 480 Query: 478 DQVTQQNAALVEEAAAAAASMQSQADSLAQLVSVFTLSGTPALPAARRT-IDITPSEPRL 536 DQ TQQNAALVEEAAAAA +MQ QA L+++VS F L G + A R+ +DITP P L Sbjct: 481 DQTTQQNAALVEEAAAAAEAMQEQAARLSEVVSQFKLLGQDQIAYAPRSAVDITPPLPAL 540 Query: 537 R 537 R Sbjct: 541 R 541 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 512 bits (1318), Expect = e-146, Method: Compositional matrix adjust. Identities = 295/509 (57%), Positives = 363/509 (71%) Query: 6 NMRIGKRLALGFAVILAFSIVITAIGIWRLQTVSSATREMMSQPLLKERLIGDWYANLAS 65 N++IG RLA+GF +L V+ A+G+WRL ++ AT +M L KER W+A + Sbjct: 3 NLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAIKE 62 Query: 66 GIRRTIAIAKSSDPALGPYFAAEAAASSKGSGEYQKKVEALLESDEEKKLFQKIGEQRKL 125 RT A+ KS D A YF + A S + QK+VEA + EEK+LF ++G+ R Sbjct: 63 NGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLRAA 122 Query: 126 YLSSRDAINKAKAAGNIEEAERVLEKDFVPASNAYQDTMRQLVELQRKDIDETAKHIDII 185 Y ++R +I K AG+ A + + V + Y D + + + Q++ ID+TA I+ Sbjct: 123 YRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAINRD 182 Query: 186 AEDSRILLLALEGLILVLGVLCAWYLTVGITRPINSAVTISRRVAEGDLTSDVQVGSKDE 245 R +LLAL + +VLG AW LT ITRP+N AVTI+ VA GDLTS + S+DE Sbjct: 183 YRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRDE 242 Query: 246 TGQLLQALQDMNISLRGIVSNVRTGTDTIATASSEIAAGNLDLSSRTEQQASALEETASS 305 TG+LL AL+ MN +L IV VR GT+TI TAS EIA GNLDLS+RTE QA +LEETAS+ Sbjct: 243 TGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETASA 302 Query: 306 MEELISTVKQNADNARQANQLAVSASEIATQGGGVVGQVVDTMGAINDSSRKIVDIISVI 365 ME+L STVKQNADNARQAN+LA SAS++ATQGG VV QVV TMGAI+ SS+KI DII VI Sbjct: 303 MEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGVI 362 Query: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLINDSVEKV 425 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LI+DSVEKV Sbjct: 363 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKV 422 Query: 426 GNGSKLVEQAGATMAEVVNSVRRVTDIVAEISSASEEQTTGIEQINHAITQMDQVTQQNA 485 +GS+LV +AG TM EVV SV RVT +V EI+ AS+EQ+ GIEQ+N AIT +D+ TQQNA Sbjct: 423 DDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQNA 482 Query: 486 ALVEEAAAAAASMQSQADSLAQLVSVFTL 514 ALVE+AAAAA SMQ QA SL VSVF L Sbjct: 483 ALVEQAAAAARSMQDQAASLTDAVSVFRL 511 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 506 bits (1303), Expect = e-144, Method: Compositional matrix adjust. Identities = 292/512 (57%), Positives = 369/512 (72%) Query: 3 IIGNMRIGKRLALGFAVILAFSIVITAIGIWRLQTVSSATREMMSQPLLKERLIGDWYAN 62 +I ++RIG RL GFAV+L FS+V+ A+GIWRL+TV+ T++MM PL ERL+ W Sbjct: 1 MIKDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTL 60 Query: 63 LASGIRRTIAIAKSSDPALGPYFAAEAAASSKGSGEYQKKVEALLESDEEKKLFQKIGEQ 122 L I+RT + KS DP L + A EAAASSK S + K VE LL S+EEKK+F I Sbjct: 61 LLIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVA 120 Query: 123 RKLYLSSRDAINKAKAAGNIEEAERVLEKDFVPASNAYQDTMRQLVELQRKDIDETAKHI 182 RK +L+ RD I AK G+ + E + +K +V + + QD MR L++ +R ID+ + I Sbjct: 121 RKQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQI 180 Query: 183 DIIAEDSRILLLALEGLILVLGVLCAWYLTVGITRPINSAVTISRRVAEGDLTSDVQVGS 242 A S+ ++ LE +IL+ G+ A LT ITRP++ A+ IS+RVA GDLTS Q Sbjct: 181 QQDASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSRAQAMG 240 Query: 243 KDETGQLLQALQDMNISLRGIVSNVRTGTDTIATASSEIAAGNLDLSSRTEQQASALEET 302 +DE GQL+ +LQ M+ L G+VS VR G D+IA AS EIA GNLDLS+RTE+QA ALE+T Sbjct: 241 RDELGQLVASLQGMSERLHGVVSTVRHGADSIAMASGEIANGNLDLSARTEEQAGALEQT 300 Query: 303 ASSMEELISTVKQNADNARQANQLAVSASEIATQGGGVVGQVVDTMGAINDSSRKIVDII 362 A+S+EEL S+V+ N+DNA QAN+L +A+ +A QGG V+ Q++ TM INDSSRKIVDII Sbjct: 301 AASIEELTSSVRTNSDNAHQANELVSTAASVAGQGGAVMDQLISTMATINDSSRKIVDII 360 Query: 363 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLINDSV 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK LI+DSV Sbjct: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSV 420 Query: 423 EKVGNGSKLVEQAGATMAEVVNSVRRVTDIVAEISSASEEQTTGIEQINHAITQMDQVTQ 482 KV GS LVEQAG TM EVV SV+ +V EIS+AS +Q GI Q+N A+ QMD VTQ Sbjct: 421 GKVSAGSTLVEQAGKTMQEVVGSVQGAHTLVGEISTASRQQAEGIHQVNQAVGQMDGVTQ 480 Query: 483 QNAALVEEAAAAAASMQSQADSLAQLVSVFTL 514 QNAALVE+AAAAA S++ QA L + V+ F+L Sbjct: 481 QNAALVEQAAAAAKSLEDQAAQLKRAVAFFSL 512 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 460 bits (1183), Expect = e-130, Method: Compositional matrix adjust. Identities = 286/514 (55%), Positives = 361/514 (70%), Gaps = 4/514 (0%) Query: 4 IGNMRIGKRLALGFAVILAFSIVITAIGIWRLQTVSSATREMMSQPLLKERLIGDWYANL 63 + +++I RLA+ FAV++ +IT +G+ L ++S ++ ++ K L + N+ Sbjct: 3 LKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRDNV 62 Query: 64 ASGIR--RTIAIAKSSDPALGPYFAAEAAASSKGSGEYQKKVEALLESDEEKKLFQKIGE 121 R R + ++ + A + +AA+S + E K+E +L + ++LFQ I E Sbjct: 63 NGAARNLRNALLGRNLEEA--TRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 Query: 122 QRKLYLSSRDAINKAKAAGNIEEAERVLEKDFVPASNAYQDTMRQLVELQRKDIDETAKH 181 R Y + RD + + EEA +L +PA + Y + Q V Q+ ++++ Sbjct: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTE 180 Query: 182 IDIIAEDSRILLLALEGLILVLGVLCAWYLTVGITRPINSAVTISRRVAEGDLTSDVQVG 241 + + ++L L + + L V+ AW +T ITRP+N AV+++ VA GDLT + Sbjct: 181 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGAT 240 Query: 242 SKDETGQLLQALQDMNISLRGIVSNVRTGTDTIATASSEIAAGNLDLSSRTEQQASALEE 301 SKDETG LL AL+ MN SL IVS VR G+DTI TAS+EIA GNLDLSSRTE+QA ALEE Sbjct: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEE 300 Query: 302 TASSMEELISTVKQNADNARQANQLAVSASEIATQGGGVVGQVVDTMGAINDSSRKIVDI 361 TAS+MEEL STVKQNADNARQAN LA +ASE+A QGG VVGQVV TMG IND+SRKIVDI Sbjct: 301 TASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDI 360 Query: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLINDS 421 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI+DS Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 Query: 422 VEKVGNGSKLVEQAGATMAEVVNSVRRVTDIVAEISSASEEQTTGIEQINHAITQMDQVT 481 V +V NGS+LVEQAG TM EVV SVRRVTD+VAEIS+AS EQ+ GIEQINHAITQMDQVT Sbjct: 421 VSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVT 480 Query: 482 QQNAALVEEAAAAAASMQSQADSLAQLVSVFTLS 515 QQNAALVEEAAAAA S+Q Q+ L+ VSVF LS Sbjct: 481 QQNAALVEEAAAAAQSLQEQSTRLSATVSVFKLS 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.126 0.327 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,117,459 Number of extensions: 34349 Number of successful extensions: 510 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 252 Number of HSP's successfully gapped: 72 Length of query: 537 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 447 Effective length of database: 1,193,720 Effective search space: 533592840 Effective search space used: 533592840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)