BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0106.p
         (204 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310704|ref|YP_003774796.1| major facilitator superfamily p...    92   4e-20

>gi|300310704|ref|YP_003774796.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 485

 Score = 91.7 bits (226), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 87/125 (69%), Gaps = 4/125 (3%)

Query: 1   MGKVFACVCLLMIGSMTEIFVPYFLQVLHGYAPLQAGYMTAAMAGGWSLASLLSSGRSGK 60
           MG VFAC+ LL++ S  EIFVPYFLQ LHGYAPL AGY  AAMAGGWS+ SL+ SGRS +
Sbjct: 287 MGCVFACISLLVMASCVEIFVPYFLQSLHGYAPLAAGYAAAAMAGGWSVGSLVGSGRSAQ 346

Query: 61  DADRMVRFGP---VAMTLSLLALVVLLPGDVDVAAEGLWLALALGGAGLGIGLGWPHLLT 117
            A RM+R GP   +   L+L AL+        V A+ L + LAL  AGLGIG+GWPHL+ 
Sbjct: 347 AAARMIRMGPWLMLLGLLALAALLPASLLAAGVVADVL-IVLALAAAGLGIGVGWPHLVA 405

Query: 118 RVLRS 122
           R +++
Sbjct: 406 RAMQA 410


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 382,512
Number of extensions: 9892
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,236,335
Effective search space: 152069205
Effective search space used: 152069205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)