BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0105.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310704|ref|YP_003774796.1| major facilitator superfamily p...   202   2e-53
gi|300311185|ref|YP_003775277.1| major facilitator superfamily p...    65   6e-12
gi|300312683|ref|YP_003776775.1| major facilitator superfamily p...    63   1e-11
gi|300314020|ref|YP_003778112.1| major facilitator superfamily p...    60   9e-11

>gi|300310704|ref|YP_003774796.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 485

 Score =  202 bits (514), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/157 (73%), Positives = 132/157 (84%)

Query: 2   HTETAVSTSWSELLTGRNLWRSVALTGGVALHAINVHIVTTILPSVVRDIGGLAYYAWNI 61
             + A   SW ELL  R+ W +VALTGGVA+HAINVHIVTTILPSVVRDIGGL YYAWN+
Sbjct: 15  QPQPASVASWGELLGRRHGWCAVALTGGVAMHAINVHIVTTILPSVVRDIGGLDYYAWNV 74

Query: 62  TLFVVASIVGSALTSKLLDKLGPRRAYLLGLAVFTLGSILCATALSMPWMLAGRSVQGLG 121
           TLFVV SI+GS LT KLL +LG R AYLL LAVF  G+++CA A SM WMLAGR+VQG+G
Sbjct: 75  TLFVVTSIIGSTLTGKLLARLGARAAYLLALAVFGAGALVCAGAGSMGWMLAGRAVQGVG 134

Query: 122 GGLLAALGYALIPVLFEQRLWSRAVALESGMWGVATL 158
           GGLLA+LGYALIP++FEQRLWSRA+AL SGMWGV+TL
Sbjct: 135 GGLLASLGYALIPLVFEQRLWSRAIALVSGMWGVSTL 171


>gi|300311185|ref|YP_003775277.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 532

 Score = 64.7 bits (156), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 87/159 (54%), Gaps = 4/159 (2%)

Query: 1   MHTETAVSTSWSELLTGRN-LWRSVALTGGVALHAINVHIVTTILPSVVRDIGGLAYYAW 59
           +HT++A S+   ++L  R  L  ++ +   + L A++  IV T LP++V ++ G   YAW
Sbjct: 3   LHTDSAHSSG--QVLPFRESLLATLGICFVIMLVALDQTIVGTALPTIVAELKGFELYAW 60

Query: 60  NITLFVVASIVGSALTSKLLDKLGPRRAYLLGLAVFTLGSILCATALSMPWMLAGRSVQG 119
             T +++ S++   +  +L D  G +   +  + VF   S LC  A SM +++  R +QG
Sbjct: 61  VATAYLLTSVITVPIFGRLGDYFGRKPFVIASIIVFVGASALCGMANSMLFLVLARGLQG 120

Query: 120 LGGGLLAALGYALIPVLF-EQRLWSRAVALESGMWGVAT 157
           +GGG+L    +A +  LF + R+  R   + S  +G+AT
Sbjct: 121 IGGGMLVGTCFASVADLFPDPRVRLRWQIILSVSFGIAT 159


>gi|300312683|ref|YP_003776775.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 498

 Score = 63.2 bits (152), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 61/105 (58%), Gaps = 7/105 (6%)

Query: 29  GVALHAINVHIVTTILPSVVRDIGGLAYYAWNITLFVVA-SIVGSALTSK---LLDKLGP 84
           G  +  ++  IV T LP++ R +G       N+   VVA ++  ++LT     L D+ G 
Sbjct: 61  GFFMQTLDTTIVNTALPAMARSLG---EPVLNMHPVVVAYTLTMASLTPASGWLADRFGT 117

Query: 85  RRAYLLGLAVFTLGSILCATALSMPWMLAGRSVQGLGGGLLAALG 129
           RR Y   + +F+LGS+LCA A S+P +LA R VQGLGG +L  +G
Sbjct: 118 RRMYFAAILLFSLGSLLCAMASSLPMLLAARVVQGLGGSMLLPVG 162


>gi|300314020|ref|YP_003778112.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 475

 Score = 60.5 bits (145), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 24  VALTGGVALHAINVHIVTTILPSVVRDIGGL-AYYAWNITLFVVASIVGSALTSKLLDKL 82
           +AL   V L  ++  I  T LP++  D+    A   W +T + +A +V     + L + +
Sbjct: 34  LALGIAVGLATLDTAIANTALPAMALDLQTTPAASVWIVTAYQLAMMVALLPLAALGEII 93

Query: 83  GPRRAYLLGLAVFTLGSILCATALSMPWMLAGRSVQGLGGGLLAALGYALIPVLFEQRLW 142
           G RR Y+ GL +FT  S+LCA A S+P ++  R +QGLGG  + ++  ALI  ++  R  
Sbjct: 94  GYRRIYIWGLVLFTAASLLCAVAWSLPTLVMARFLQGLGGAGIMSVNTALIRFIYPTRSL 153

Query: 143 SRAVALESGMWGVA 156
            R V L + +  +A
Sbjct: 154 GRGVGLNTLIVAIA 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.135    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 600,601
Number of extensions: 21178
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 10
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 10
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)