BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0103.p
         (163 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312524|ref|YP_003776616.1| hypothetical protein Hsero_3227...    96   1e-21

>gi|300312524|ref|YP_003776616.1| hypothetical protein Hsero_3227
           [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score = 95.9 bits (237), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 5/136 (3%)

Query: 25  ACLLALTMALSACAIQPAAEQATPTKEVPQARVYIKSMLSPTSGTAEVQFSRTSTFLYGN 84
           A  + + +AL+ACA      Q T + ++P  RVYIKSM     G + VQF R    L  N
Sbjct: 9   AASITVALALAACA---TPVQRTASGDIPPPRVYIKSMTEQAEGLSRVQFQRPGGLL-NN 64

Query: 85  APLELAINDVVLAQIQSGEHFSIWLKPGTSYDFSIRPIHSLNSPAYPQTKKISVELKNPG 144
             LEL INDV LAQI  GEH +IWLKPG SYD   + +H+L + +     K++++++   
Sbjct: 65  DMLELTINDVTLAQIIGGEHLTIWLKPG-SYDLGAKRVHTLTNSSSSSEDKLTLQVRPGA 123

Query: 145 VYKVRISAGIEGATLQ 160
            Y++++   + G  ++
Sbjct: 124 SYQLQVGTDLGGVKMR 139


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.126    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 417,311
Number of extensions: 14018
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 85
Effective length of database: 1,250,540
Effective search space: 106295900
Effective search space used: 106295900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)