BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0098.p
         (289 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312528|ref|YP_003776620.1| lysophospholipase [Herbaspirill...   319   1e-88
gi|300309425|ref|YP_003773517.1| lysophospholipase [Herbaspirill...    97   2e-21

>gi|300312528|ref|YP_003776620.1| lysophospholipase [Herbaspirillum
           seropedicae SmR1]
          Length = 282

 Score =  319 bits (818), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 162/265 (61%), Positives = 195/265 (73%)

Query: 20  FLQAADGVRLFYREYLHPQPRGAVVLVHGLGEHGGRYAELAGIFHAAGFSVRIHDHRGHG 79
           ++ A DG RLF R++L P    AV +VHGLGEHGGRY  LA +F+ AG SVRI D RGHG
Sbjct: 11  WIDADDGTRLFCRDWLLPGATAAVQMVHGLGEHGGRYFSLARLFNEAGLSVRICDQRGHG 70

Query: 80  RSEGARGSLQATDDFLDDLKTVFDDFAAATQTAPFLFGHSMGGLVAARFATGGWSRVRGL 139
            S G +GSL   DD L DLK  FDDF+  T+  P LFGHSMGGLVAARFATGG+S VR L
Sbjct: 71  NSGGVQGSLIRPDDLLRDLKLSFDDFSRRTECVPVLFGHSMGGLVAARFATGGYSPVRAL 130

Query: 140 MLSSPALAIRMSGFQKFLLALTTRIAPGFAVPTSLPAQRLSHDEAVGRDFLGDPLNHGKV 199
            LSSPALA+ M G+QK LLA++T IAPG A+PT+LPA R+SHD    R +  DPLNHGK+
Sbjct: 131 ALSSPALALDMKGWQKLLLAVSTAIAPGLALPTALPASRISHDPHEVRAYRKDPLNHGKI 190

Query: 200 AARVVNFMLDAMACVQRDAGTFTSPLLLQFAGDDAFVDPSGSRAFFAHVPQVDKTMHCYD 259
           A R+++FMLDAM  V+R+AG FT P+LLQ AGDDAFV P GSRAFF  +P   KT+H Y+
Sbjct: 191 APRMLHFMLDAMRQVEREAGQFTRPVLLQVAGDDAFVAPRGSRAFFDALPSGRKTLHWYE 250

Query: 260 DAFHEIFNESAERRLRAQKDVVAWL 284
            A+HEIFNE A  R +A +D+  WL
Sbjct: 251 HAYHEIFNEEASLRAQAMQDLRNWL 275


>gi|300309425|ref|YP_003773517.1| lysophospholipase [Herbaspirillum
           seropedicae SmR1]
          Length = 583

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 112/251 (44%), Gaps = 6/251 (2%)

Query: 25  DGVRLFYREY--LHPQPRGAVVLVHGLGEHGGRYAELAGIFHAAGFSVRIHDHRGHGRSE 82
           D   LFYR +     + RGAVV+ H   EHGGR A L        F     D RGHGRS 
Sbjct: 14  DDQTLFYRRWPATATERRGAVVMFHRGHEHGGRMAHLVDELDLPDFDFYAWDARGHGRSP 73

Query: 83  GARGSLQATDDFLDDLKTVFDDFAAATQTAP---FLFGHSMGGLVAARFATGGWSRVRGL 139
           G RG   +  D + D++T         Q A     +   S+G ++ + +A     RVR L
Sbjct: 74  GPRGYSPSFADSVRDVQTFIGHLRQQWQLAEEDLAVLAQSVGAVLVSTWAHDYAPRVRCL 133

Query: 140 MLSSPALAIRMS-GFQKFLLALTTRIAPGFAVPTSLPAQRLSHDEAVGRDFLGDPLNHGK 198
           +L+SPA  +++   F +  LAL  ++   F V + + A+ L+HD A    +  DPL    
Sbjct: 134 VLASPAFKVKLYVPFARPGLALQQKLRGNFFVNSYVKAKYLTHDPARQASYDSDPLISRP 193

Query: 199 VAARVVNFMLDAMACVQRDAGTFTSPLLLQFAGDDAFVDPSGSRAFFAHVPQVDKTMHCY 258
           ++  ++  + +A   V  DA   T P  L  +G D  V       FF  +    K  H  
Sbjct: 194 ISVNILLALYEAAERVVADAQAITIPTQLLISGADWVVHHGPQHDFFDRLGTTTKEKHVL 253

Query: 259 DDAFHEIFNES 269
              +H+ F E 
Sbjct: 254 PGFYHDTFGEK 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 914,205
Number of extensions: 37729
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 2
Length of query: 289
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,222,130
Effective search space: 250536650
Effective search space used: 250536650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)