BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0097.p
         (459 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312529|ref|YP_003776621.1| hypothetical protein Hsero_3232...   601   e-173

>gi|300312529|ref|YP_003776621.1| hypothetical protein Hsero_3232
           [Herbaspirillum seropedicae SmR1]
          Length = 483

 Score =  601 bits (1550), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 315/447 (70%), Positives = 366/447 (81%), Gaps = 8/447 (1%)

Query: 1   LVLLLLGADFIRRYWHVLALMGLAWGIVGVSLCIDALDGVLVFPLTLFGWLLLLESLATL 60
           LVLLLLGADFIRR WHVLAL GL+WG +GVSL IDALDGVL FPLTLFG+LLLLESL TL
Sbjct: 18  LVLLLLGADFIRRNWHVLALAGLSWGAIGVSLAIDALDGVLNFPLTLFGYLLLLESLVTL 77

Query: 61  FLASSGVGAQKTLRYVKGGLFLLIALLIISPYHQSDMLLAMLFGTAFTIGGGLQIISASI 120
           ++A+SG+GAQKTLRYVKG LFLLIA+L+I+ +  S+M LAMLFG AF IGG LQI SA +
Sbjct: 78  WVANSGIGAQKTLRYVKGALFLLIAVLVITQHQASNMALAMLFGIAFAIGGALQITSALV 137

Query: 121 VRFPRWRMALAGGIGQILIAIFFFQPYPTHYKGTVPYCLGMGLIFSGWSLIWLASRSRRL 180
           VRFPRWR AL GG  QIL+AIFFFQPYPTHYKGTVP+CL +GLIF GW++IWLA R+R L
Sbjct: 138 VRFPRWRTALVGGGVQILLAIFFFQPYPTHYKGTVPFCLALGLIFGGWNMIWLALRTRML 197

Query: 181 PRESSLSQLAYRNADSDRPLDAGSYDG--------QLAATTPTVNASATPLTVHVWTPAG 232
           P + S+  LA RN+  DRP DAG +          Q  AT     ++A PLTVHVWTPAG
Sbjct: 198 PADVSVDMLAARNSGDDRPFDAGVHRDDATLEEMRQPPATPAAAVSAAQPLTVHVWTPAG 257

Query: 233 SAREATLHRPIVDRYIAAVDASGRISTGHAALEIAPSLYISLYPAVEIDRSPGEFSRLLR 292
           SAR     +P++DRYIAAVD +G ISTGHAALEI P LYISLYPA EIDRSP +F+RLLR
Sbjct: 258 SARGPARRQPVIDRYIAAVDTNGVISTGHAALEIPPDLYISLYPAEEIDRSPDQFARLLR 317

Query: 293 ATPDNNVRGRYLADYPSESAAWCESTEKISFRDYDARHLQQFWQDYRREEIYNLTHRNCS 352
           AT DN+V+GRYL+DYPSE+A+WCESTEKI FRDY    L +FWQ YR+ EIYNLT+RNCS
Sbjct: 318 ATADNDVKGRYLSDYPSEAASWCESTEKIVFRDYCRARLDRFWQRYRQTEIYNLTNRNCS 377

Query: 353 STVAHALEAALEGVIGKRADHWLSFVKILFTPEVWVASHIRKRAMTMAWTPGLILDYARA 412
           STVA+ALE+ALEGVIG R  HW + ++++FTPE+WVASHIRKRA+TMAWTPG++LDYARA
Sbjct: 378 STVANALESALEGVIGGRNRHWTNALRMIFTPEIWVASHIRKRAVTMAWTPGMVLDYARA 437

Query: 413 LRAVVHPRPLSWLASVQLALRSIRRTR 439
           LRAVVHPRPLSW AS+ LALR  RR R
Sbjct: 438 LRAVVHPRPLSWAASLHLALRQSRRLR 464


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,240,060
Number of extensions: 46840
Number of successful extensions: 226
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,203,190
Effective search space: 446383490
Effective search space used: 446383490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)