BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0096.p
         (276 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312530|ref|YP_003776622.1| transmembrane protein [Herbaspi...   227   8e-61
gi|300312046|ref|YP_003776138.1| hypothetical protein Hsero_2734...   171   5e-44

>gi|300312530|ref|YP_003776622.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 269

 Score =  227 bits (579), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 140/269 (52%), Positives = 172/269 (63%), Gaps = 7/269 (2%)

Query: 5   DDNGRPSAPFCPSPFMPFMLIFSALASTVLLFPLNVVLLGALGLLLRRRRPE----ALWL 60
           D+ G    P C    MP  ++ SALAST+LL P++ +LL   GLLLRR  P      L L
Sbjct: 3   DNAGIVDFPVCLP--MPLSVLVSALASTLLLPPVSPLLLALAGLLLRRHAPRWRRFGLLL 60

Query: 61  SWTAVTLLLVFSTRAGALLLVAPLEAQTTPLASIPPTAQAIVVLSGARLSNAPEYAHQDK 120
               V  LLV STR G+LLL+APLE  + P+   P  AQAIV+L   R+  APEY   D 
Sbjct: 61  IVLGVATLLVLSTRVGSLLLIAPLE-NSYPVLRSPGQAQAIVILGSGRIDRAPEYGGLDD 119

Query: 121 PGFLTLARLQYAARLHRASGLPILVTGGKPDGSVESEAAVMARSLRDDFGVATRWQEQAS 180
              + + RLQY A LHR SGLPILVTGG PDGS ESEAAVMAR+L  DF V  RWQE  S
Sbjct: 120 ANAIGMKRLQYGAYLHRQSGLPILVTGGNPDGSPESEAAVMARTLERDFAVPVRWQEGRS 179

Query: 181 DTTADNARLTAPILLGTGIQRVLLVTDAMHMPRAVRSFRAQGIEVIPAPTVFFSSERLTL 240
           +TT DNA L+A +L   GI R+LLVTD++HMPRA++ F   G++V  APTVF    R  +
Sbjct: 180 NTTYDNATLSAAMLKEAGISRILLVTDSLHMPRAMQVFATTGLQVQAAPTVFAGQARTRV 239

Query: 241 NDWLPGGEGLRRSNYALHEWIGMLWYALR 269
            D+LP    L+ ++YAL EWIG LWY +R
Sbjct: 240 TDYLPNAASLQLASYALREWIGQLWYRVR 268


>gi|300312046|ref|YP_003776138.1| hypothetical protein Hsero_2734
           [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  171 bits (434), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 101/209 (48%), Positives = 131/209 (62%), Gaps = 5/209 (2%)

Query: 65  VTLLLVFSTRAGALLLVAPLEAQTTPL--ASIPPTAQAIVVLSGARLSNAPEYAHQDKPG 122
           V LL +    A A L+V PLE Q  P+  A     AQAIVVL+   L  APEY  +D+P 
Sbjct: 46  VALLTLICMPAVADLMVRPLE-QGYPVLSAEAARQAQAIVVLAAGSLDQAPEYEGRDQPD 104

Query: 123 FLTLARLQYAARLHRASGLPILVTGG--KPDGSVESEAAVMARSLRDDFGVATRWQEQAS 180
           ++ LARL+YAARL   +GLP+LV+GG  + +   +++A  MA +LR+DF    RW E  S
Sbjct: 105 YVALARLRYAARLQHQTGLPVLVSGGNAREETPEQNKALAMAEALREDFRTPVRWIEGGS 164

Query: 181 DTTADNARLTAPILLGTGIQRVLLVTDAMHMPRAVRSFRAQGIEVIPAPTVFFSSERLTL 240
           + T +NA  +A +L   G+QRVLLVTDAMHMPRA+ +F   G+    APT FFS  R   
Sbjct: 165 ENTEENALRSAALLRADGVQRVLLVTDAMHMPRAMLAFAQAGLVPTAAPTAFFSLPRWRW 224

Query: 241 NDWLPGGEGLRRSNYALHEWIGMLWYALR 269
              LP  EGLRRS YA +EW+G+ WY LR
Sbjct: 225 PALLPSAEGLRRSWYASYEWLGLGWYRLR 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 858,931
Number of extensions: 34264
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 276
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,222,130
Effective search space: 234648960
Effective search space used: 234648960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)