BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0095.p (603 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 721 0.0 gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis tra... 560 e-160 gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis tra... 453 e-128 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 405 e-114 gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 384 e-107 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/513 (74%), Positives = 439/513 (85%) Query: 2 KLSFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELA 61 +LSF ++LW PLV+SLIALLAIS+F+A NIRLEERK DL N+ Q A+S +K YG LA Sbjct: 3 QLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGALA 62 Query: 62 KNGTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAG 121 +G +SKE+AQK A +K +RYG DGYFS+S S + VMHPIK EL+GKDL+NFKDPAG Sbjct: 63 DSGALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDPAG 122 Query: 122 NQVFVDIAKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 N +FV+I KA + P+GGF++Y+WPKVG+ +PVPKTS+ Y+PWDW +TTG YMDD+NAA Sbjct: 123 NNLFVEITKAGSKPEGGFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDINAA 182 Query: 182 FTQSVYQLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTA 241 F ++++Q+ + S L+ALV+V N ILR IGGDP AAE+ANRI+ GDLT I TA Sbjct: 183 FLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQGDLTPNIETA 242 Query: 242 PGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEET 301 PGD+SSL+YA + MRDSL TI+NIK+SA TIA+AS EIASGNLDLS RTEQQAGS+EET Sbjct: 243 PGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIEET 302 Query: 302 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 361 ASAMEELT+TVKQNADNARQANQLA SASEVAIQGG+VVSQVV TM I +SSRKI DII Sbjct: 303 ASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIADII 362 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS++AAKEIKTLIDDSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSV 422 Query: 422 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQ 481 +KVD GSKLV+QAGATM EVVASV+RVTDIVGEISSASQEQSAGI EVG+AITQMDEGTQ Sbjct: 423 AKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQ 482 Query: 482 QNAALVEQAAAAAQSLQDQAATLAQLVGRFKLD 514 QNAALVEQAAAAAQSLQDQAATLA LVGRF +D Sbjct: 483 QNAALVEQAAAAAQSLQDQAATLAGLVGRFHVD 515 >gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 560 bits (1444), Expect = e-160, Method: Compositional matrix adjust. Identities = 300/515 (58%), Positives = 395/515 (76%), Gaps = 1/515 (0%) Query: 3 LSFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELAK 62 LS K++LW PLV S +ALL +S+++AYQ ++++ ER++ L +V ++A +TI Y +L Sbjct: 4 LSLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAKLES 63 Query: 63 NGTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAGN 122 +G +S+E+AQK A+AR++ RY DGY ++ ++++V VMHPI +L+G+++ +FKD GN Sbjct: 64 DGKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDAKGN 123 Query: 123 QVFVDIAKAAASPQG-GFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 +++ IA +S G G++ Y WP+ GS P PK + R++PW+W + VY DD+ A Sbjct: 124 ELYKMIAATGSSGAGKGYLEYWWPRPGSDQPSPKMGFVKRFKPWNWDLICSVYSDDIQAD 183 Query: 182 FTQSVYQLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTA 241 F +++ Q + ++ G ++L + + +R+I R IGG+PG+AAE+A +I+ GDLT VI+T Sbjct: 184 FRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVIHTT 243 Query: 242 PGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEET 301 GD SLV A RD L T+ IK + ++I T+ EIA+GN+DLS+RTEQQAGSLEET Sbjct: 244 QGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSLEET 303 Query: 302 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 361 AS MEELT+TVKQNA NA+ ANQLA A++VAIQGG VV QVV TM SIN SSRKIVDII Sbjct: 304 ASTMEELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIVDII 363 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 421 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS+AAAKEIK LIDDSV Sbjct: 364 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDDSV 423 Query: 422 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQ 481 KVD G+ LVQ+AG TM EVV+S++ V+ +V EI++AS EQS+GI +VG+AITQMDE TQ Sbjct: 424 GKVDAGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDETTQ 483 Query: 482 QNAALVEQAAAAAQSLQDQAATLAQLVGRFKLDAG 516 QNAALVEQAAAAAQSLQDQA L +LVG F L+ G Sbjct: 484 QNAALVEQAAAAAQSLQDQADKLVRLVGVFTLERG 518 >gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 453 bits (1165), Expect = e-128, Method: Compositional matrix adjust. Identities = 267/513 (52%), Positives = 343/513 (66%), Gaps = 2/513 (0%) Query: 4 SFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELAKN 63 S K +L + LV+ LL ++ ++A+ A ++ERK L V + A +K Y Sbjct: 3 SLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYVADVAA 62 Query: 64 GTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAGNQ 123 G +SKEEAQK AL R+ MRY D Y + +S V +M P + GK++ + KD G Sbjct: 63 GRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEGKA 122 Query: 124 VFVDIAKAAASPQGGFINYIWPKVGSPDP--VPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 +V++ K Q GF+ Y+ G+ D PK SY + WDW + TGV++ DV A Sbjct: 123 YYVEMMKVGQEKQHGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQAQ 182 Query: 182 FTQSVYQLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTA 241 F +++L+ I+ +++ +++ R I +GG+P A +IA RI++GDLT+ + T Sbjct: 183 FRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQTR 242 Query: 242 PGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEET 301 PGDT SL+YA MR+ L I I+ D I + EIA+GNLDLSSRTE+QAGSL T Sbjct: 243 PGDTRSLLYAMATMRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLATT 302 Query: 302 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 361 AS M+ LT+TVKQNADNARQA QLA SAS++A +GG VV QVV TM I SSRKI DII Sbjct: 303 ASNMDGLTATVKQNADNARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIADII 362 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS+ AAKEIK LI+DSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDSV 422 Query: 422 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQ 481 +V GS V +AG TM EVVA+V+ +TDIVGEIS+AS+EQ GI +V AI +MD+ TQ Sbjct: 423 QRVGSGSDQVARAGQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQVTQ 482 Query: 482 QNAALVEQAAAAAQSLQDQAATLAQLVGRFKLD 514 QNAALVEQAAAAA SL++QA L V F++D Sbjct: 483 QNAALVEQAAAAAGSLEEQARRLKAAVSTFRVD 515 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 405 bits (1041), Expect = e-114, Method: Compositional matrix adjust. Identities = 229/338 (67%), Positives = 268/338 (79%), Gaps = 10/338 (2%) Query: 199 ILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTAPGDTSSLVYAFKRMRDS 258 ILIA+++ R +L+ +GG+P AA+IA +I+DGDLT + T GD SSL++A K MRDS Sbjct: 200 ILIAVLL--TRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDS 257 Query: 259 LTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEETASAMEELTSTVKQNADN 318 L ++ ++ TI ASSEIASGNLDLSSRTEQQA SLEETASAMEEL +TVKQNADN Sbjct: 258 LVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADN 317 Query: 319 ARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDIISVIDGIAFQTNILALNA 378 A+QA+QLAVSASEVA QGG VV+QVV TM IN SSRKIVDIISVIDGIAFQTNILALNA Sbjct: 318 AKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNA 377 Query: 379 AVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSVSKVDVGSKLVQQAGATM 438 AVEAARAGEQGRGFAVVASEVRSLAQRS+ AAKEI LI+DSVS+++ GS LV+QAG TM Sbjct: 378 AVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTM 437 Query: 439 DEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQQNAALVEQAAAAAQSLQ 498 + VV SVKRVTD+V EIS ASQEQS GI +V AIT MDE TQQN+ALVE+AAAAA S++ Sbjct: 438 ENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANSMK 497 Query: 499 DQAATLAQLVGRFKLDAGHVXQLVGRFKLDAGHVQAPA 536 +QA L+ LV F+LDA Q +G+ QA A Sbjct: 498 EQAGALSGLVATFRLDAQQARQ--------SGYSQASA 527 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust. Identities = 223/326 (68%), Positives = 263/326 (80%), Gaps = 1/326 (0%) Query: 189 LIAIVFGFSIILIALVV-VNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTAPGDTSS 247 L+A++ G ++ ALV V RS+L+ +GG+P AA+IA +I+ GDLT ++ PGDT+S Sbjct: 197 LVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADVDAKPGDTTS 256 Query: 248 LVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEETASAMEE 307 L++A K+MRD+L + ++ I AS+EIA+GN+DLSSRTEQQAG+LEETASAMEE Sbjct: 257 LLFAIKKMRDNLAAIVGKVREGTHAIEQASAEIATGNMDLSSRTEQQAGALEETASAMEE 316 Query: 308 LTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDIISVIDGI 367 L STVKQNADNARQA+QLAVSAS+VA QGG VV QVV TM IN SSRKIVDIISVIDGI Sbjct: 317 LMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVDIISVIDGI 376 Query: 368 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSVSKVDVG 427 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS+ AAKEI LI+DSV +++ G Sbjct: 377 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLINDSVGQIEQG 436 Query: 428 SKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQQNAALV 487 S LV QAGATM+ VV SVKRVTD+V EIS ASQEQS GI +V AIT MDE TQQN+ALV Sbjct: 437 SSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEATQQNSALV 496 Query: 488 EQAAAAAQSLQDQAATLAQLVGRFKL 513 E+AAAAA S++ QA LA LV FKL Sbjct: 497 EEAAAAANSMKTQAEQLAGLVSTFKL 522 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.129 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,435,173 Number of extensions: 50522 Number of successful extensions: 592 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 325 Number of HSP's successfully gapped: 73 Length of query: 603 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 512 Effective length of database: 1,188,985 Effective search space: 608760320 Effective search space used: 608760320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)