BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0091.p
         (448 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312542|ref|YP_003776634.1| TonB-dependent receptor protein...   482   e-137

>gi|300312542|ref|YP_003776634.1| TonB-dependent receptor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 755

 Score =  482 bits (1241), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/394 (61%), Positives = 294/394 (74%), Gaps = 4/394 (1%)

Query: 30  PFPFPLRPLLLAMIAAWSPLTEAQSQSESQPESIAALPEVVVKESRSVSEKNHLPTTTES 89
           PFP   R L+L++++AWS    AQ QS  +    AALP + V+ + +  ++  LP T+ S
Sbjct: 3   PFPLRRRRLILSVLSAWSGAALAQ-QSAVEASDAAALPTIEVRGTVAAPQRTQLPQTSAS 61

Query: 90  ITAAKAADTVNAMNVEDTLKYLPNVLVRKRYIGDTQAPMSTRTTGINAGARSLIYADGML 149
           +TA  AADT+N  +  D LKYLP++ VRKRYIGDTQ+P++TRTTG+NA ARSL+YADG+L
Sbjct: 62  VTADTAADTINVTDSADALKYLPSLSVRKRYIGDTQSPLATRTTGVNASARSLVYADGIL 121

Query: 150 LSALINNNNGNGSPRWFMVAPEEVERIDVLYGPFAAQYPGNSYGAVTEITTRMPDHFEAS 209
           LSAL+NNNNGNGSPRWFMVAPEE+ RIDV+YGPFAA+YPGNSYGAVTEITTRMP+ FEAS
Sbjct: 122 LSALVNNNNGNGSPRWFMVAPEEIARIDVMYGPFAAEYPGNSYGAVTEITTRMPERFEAS 181

Query: 210 VKANTAFQDFSQYGTSNTYRAQEFSATLGNRSGDLSWWFSANHLDSYSQPVSYVTAATAP 269
           +K   A QDFSQYG S TYRAQE +  LGNRSG L+W FS NHLDSYS PV+YVTAATAP
Sbjct: 182 IKTQYAQQDFSQYGVSGTYRAQEVNVGLGNRSGALAWRFSVNHLDSYSPPVTYVTAATAP 241

Query: 270 PGSXSIGGYAAQDRTGKKIFVLGANGLTHTVQDNAKLKLAYDFSPTLTAAYTLGYWQNRA 329
            GS   G  A QDR G+ I VLGA  LTHTVQD A+LKL+YDF+PTLTA YTLG+WQN+A
Sbjct: 242 AGST--GAVATQDRLGRNIQVLGAGNLTHTVQDTARLKLSYDFTPTLTATYTLGFWQNQA 299

Query: 330 DSHGQSYLRNAAGATVYPSGLVSNNTEQEQWMQSLSVRSKTQGVFDWEAVAGNFSMSKDL 389
           ++   ++LRNA GA VY SG  SN  EQ+QWMQ L VRS T GV+DW+  A   S S+DL
Sbjct: 300 NATPHTFLRNAVGAPVYTSGFNSNTVEQQQWMQGLEVRSHTDGVWDWQVAASAISSSRDL 359

Query: 390 TRASTGLYPAAQNGGNTPAAPAGTR-STSRASGV 422
           TR ST   PA   G  + A  +GT  ST  A G+
Sbjct: 360 TRTSTTTLPAGLAGAGSIADASGTGWSTLDAKGI 393


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.125    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,226,872
Number of extensions: 46688
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,203,190
Effective search space: 433148400
Effective search space used: 433148400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)