BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0088.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312546|ref|YP_003776638.1| hypothetical protein Hsero_3249...   111   2e-26

>gi|300312546|ref|YP_003776638.1| hypothetical protein Hsero_3249
          [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score =  111 bits (278), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 68/86 (79%), Gaps = 1/86 (1%)

Query: 3  LKRL-VIPALLSTLLLAASAQAHHVWLQQDAKSAHLYFGEFGENLRETSPGLLDRFVQPS 61
          +KRL ++  L ++LLLA  A AH +WLQQD K A LYFGEFG+NLRE SPGLLD+FV PS
Sbjct: 1  MKRLAIVSGLFTSLLLALPASAHQIWLQQDGKEAKLYFGEFGDNLREVSPGLLDKFVSPS 60

Query: 62 AVLLGANGDKTLDVNKGKNAYALSAR 87
          AVL+ A GD+TL ++K  +A++LSA+
Sbjct: 61 AVLISAQGDRTLALSKQSDAFSLSAK 86


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 443,431
Number of extensions: 17616
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)